Исследование взаимосвязи между биологическими свойствами и структурой белка оболочки вируса табачной мозаики
Диссертация
Выяснение молекулярных механизмов, лежащих в основе корреляции между биологическими свойствами вируса и структурой его генома является не только важным с точки зрения фундаментальных исследований, но и имеет существенное значение для разработки эффективных систем защиты растений от вирусной инфекции. Ключевую роль в формировании биологических свойств вирусов (круг растений-хозяев, симптомы… Читать ещё >
Список литературы
- Беленович Е.В., Генерозов Э. В., Новиков В. К. и Завриев С.К. (1997). Свойства и структура генома штамма К2 вируса табачной мозаики. Молекулярная биология. 31, 826−830.
- Гольдин М. И. Вирусные включения в растительной клетке и природа вирусов. М. 1963.
- Гиббс А. Харрисон Б. Основы вирусологии растений. Москва: «Мир». 1978.
- Маниатис Т., Фрич Е., Сэмбрук Дж. Методы генной инженерии. Молекулярное клонирование. Москва. «Мир». 1984
- Новиков В.К., Добров Е. В., Беленович Е. В. и Завриев С.К. (2000). ^ Биологические свойства и структура генома казахского изолята К1вируса табачной мозаики. Молекулярная биология. 34, 326−331
- Уикли Б. 1975. Электронная микроскопия для начинающих. М.: Мир. с. 62.
- Ханаан Д. Методы трансформации Е. coli. В книге: клонирование ДНК: # методы, под редакцией Д.Гловера. Москва, «Мир». 1988
- Arce-Johnson P., Reimann-Philipp U., Padgett H.S., Rivera-Bustamante R., Beachy R.N. (1997). Requirement of the movement protein for long distance spread of tobacco mosaic virus in grafted plants. Mol. Plant. Microbe Interact. 10, 691−699.
- Atabecov J.G., Taliansky M.E. (1990). Expression of a plant virus coded transport function by different virus genomes. Adv. Virus Res. 39, 201−248.
- Beachy R. N., Loesch-Fries S., and Turner N. E. (1990). Coat protein mediatedmresistance against virus infection. Annu. Rev. Phytopatol. 28, 451.
- Beachy R.N., Heinlein M. (2000). Role of P30 in replication and spread of TMV. Traffic. 7, 540−544.
- Beachy R.N., Zaitlin M. (1977) Characterization and in vitro translation of the RNAs from less-than-fiill-length, virus-related, nucleoprotein rods present intobacco mosaic virus preparations. Virology. 81, 160−169.
- Berzal-Herranz A., de la Crus A., Tenllado F., Diaz-Ruiz J. R., Lopez L., Sanzо
- A.I., Vaquero C., Serra M. Т., and Garcia-Luque I. (1995). The Capsicum L gene-mediated resistance against the tobamoviruses is elicited by the coat protein. Virology. 209, 498−505.
- Bhyravbhatla B, Watowich SJ, Caspar DL. (1998). Refined atomic model ofmthe four-layer aggregate of the tobacco mosaic virus coat protein at 2.4-A resolution. Biophys. J. 74, 604−615.
- Blooomer A. C., Champness J. N., Bricogne G., Staden R., Klug A. (1978). Protein disk of tobacco mosaic virus at 2,8 A0 resolution showing the interaction within and between subunits. Nature. 26, 362−368.
- Ш 17. Caspar D.L.D. (1963). Assembly and stability of the tobacco mosaictobamovirus particle. Adv. Protein Chem. 18, 37−121.
- Caspar D.L.D., Namba K. (1990). Switching in the self-assembly of the tobacco vosaic virus. Adv. Byophys. 26, 157−185.
- Chen J., Watanabe Y., Sako N., Oshima K., and Okada Y. (1996). Complete nucleotide sequence and synthesis of infectious in vitro transcripts from a full— length cDNA clone of a rakkyo strain of tobacco mosaic virus. Archives of Virology. 141, 885−900.
- Culver J.N., Dawson W.O., Plonk K., Stubbs G. (1995). Site-directed mutagenesis confirms the involvement of carboxilate groups in the disassembly of tobacco mosaic virus. Virology. 206, 724−730.
- Culver J.N. (2002). Tobacco mosaic virus assembly and disassembly: ."I determinants in pathogenicity and resistance. Annu. Rev. Phytopathol. 40, 287 308.
- Dawson W. O., Beck D.L., Knorr D.A. and Grantham G. L. (1986). cDNA cloning of the complete genom of tobacco mosaic virus and production of infectious transcripts. Proc. Natl. Acad. Sci. USA. 83, 1932−1836.
- Dawson W. O., Bubrick P., and Grantham G. L. (1988). Modifications of thetobacco mosaic virus coat protein gene affecting replication, movement, and symptomalogy. Phytopathology. 78, 783−789.
- Deom C.M., Oliver M.J., Beachy R.N. (1987). The 30-kilodalton gene product of tobacco mosaic virus potentiates virus movement. Scince. 237, 389−394.
- Ding В., Haudenshield J.S., Hull R.J., Wolf S., Beachy R.N., Lucas W.J.1992). Secondary plasmodesmata are specific sites of localization of thetobacco mosaic virus movement protein in transgenic tobacco plants. Plant Cell. 4,915−928.
- Dorokhov Yu.L., Ivanov P.A., Novikov V.K., Agranovsky A.A., Morozov S.Yu., Efimov V.A., Casper R., Atabekov J.G. (1994). Complete nucleotide
- Ф sequence and genome organization of a tobamovirus infecting cruciferaeplants. FEBSLett. 350, 5−8.
- Dunigan D.D., and Zaitlin M. (1990). Capping of tobacco mosaic virus RNA. Analysis of viral coded guanililtransferase-like activity. J. Biological Chemistry. 265, 7779−7786.
- Frale A. and Garsia-Arenal F. (1990). A classification of tobamoviruses based on comparison among their 126K proteins. J. Gen. Virol. 71, 2223−2228.
- Goelet P., Lomonossoff G.P., Butler P.J.G. et al. (1982). Nucleotide sequence of tobacco mosaic virus RNA. Proc. Natl. Acad. Sci. USA. 79, 5818−5822.
- Gorbalenya A.E., Koonin E.V., Donchenko A.P., Blinov V.M. (1988a). A novel superfamily of nucleoside triphosphate-binding motif containing
- Gorbalenya A.E., Koonin E.V., Donchenko A.P., Blinov V.M. (19 886). A conserved NTP-motif in putative helicases. Nature. 333, 22.
- Gorbalenya A.E. and Koonin E.V. (1989). Viral proteins containing the purine NTP-bindingsequence pattern. Nucl. Acids Res. 17, 8413−8440.
- Goregaoker S.P., Lewandowski D.J., Culver J.N. (2001). Identification and functional analysis of an interaction between domains of the 126/183-kDa replicase-associated proteins of tobacco mosaic virus. Virology. 282, 320−328.
- Heinlein M., Padgett H.S., Gens J.S., Pickard B.G., Casper S.J., Epel B.L., Beachy R.N. (1998). Changing patterns of localization of the tobacco mosaic
- Щ virus movement protein and replicase to the endoplasmic reticulum andmicrotubules during infection. Plant Cell. 7,1107−1120.
- Hilf M.E., Dawson W.O. (1993). The tobamovirus capsid protein functions as a host-specific determinant of long-distance movement. Virology. 193, 106 114.
- Holmes K.S. (1979). Protein-RNA interactions during TMV assembly. J.
- Supramol Struct. 12, 305−320.
- Ishikawa M., Meshi Т., Motoyoshi F., Takamatsu N., Okada Y. (1986). Invitro mutagenesis of the putative replicase genes of tobacco mosaic virus. Nucleic Acids Res. 14, 8291−8305.
- Koenig R., Paul H.L. (1982). Variants of ELISA in plant virus diagnosis. J. Virol. Meth. 5,113−125.
- Koonin E.V. (1991). The phylogeny of RNA-dependent RNA polymerases of ^ positive-strand RNA viruses. J. Gen. Virol. 72, 2197−2206.
- Koonin E.V., Dolja V.V. (1993). Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit. Rev. Biochem. Mol. Biol. 28, 375−430.
- Laemmli U.K. (1970). Cleavage of structural proteins during the assembly of W the head of bacteriophage T4. Nature. 227, 680−685.
- Lewandowski D. J. and Dawson W.O. Enciclopedia of Virology plus.0
- Copyright Academic Press, 1995.
- Lewandowski D.J., Dawson W O. (2000). Functions of the 126- and 183-kDa proteins of tobacco mosaic virus. Virology. 25, 90−98.
- Lu В., Stubbs G., Culver J.N. (1996). Carboxylate interactions involved in the dissasembly of tobacco mosaic tobamovirus. Virology. 225, 11−20.
- Lu В., Stubbs G., Culver J.N. (1998). Coat protein interactions involved in tobacco mosaic tobamovirus cross-protection. Virology. 248, 188−198.
- Mas P., Beachy R.N. (1998). Distribution of TMV movement protein in single living protoplasts immobilized in agarose. Plant J. 15, 835−842.
- Mas P., Beachy R.N. (1999). Replication of tobacco mosaic virus on endoplasmic reticulum and role of the cytoskeleton and virus movement protein in intracellular distribution of viral RNA. J. Cell Biol. 147,945−958.
- Meshi Т., Ohno Т., Iba H., Okada Y. (1981). Nucleotide sequence of a cloned cDNA copy of TMV (cowpea strain) RNA, including the assembly origin, the coat protein cistron, and the 3' non-coding region. Mol. Gen. Genet. 184, 2025.
- Meshi Т., Ohno Т., Okada Y. (1982). Nucleotide sequence and its character of cistron coding for the 30 К protein of tobacco mosaic virus (OM strain). J. Biochem. 91,1441−1444.
- Meshi Т., Ishikava M., Motoyoshi F., Semba K., and Okada Y. (1986). In vitro transcription of infections RNAs from full-length cDNAs of tobacco mosaic virus. Proc. Natl. Acad. Sci. USA. 83, 5043−5047.
- Meshi Т., Watanabe H., Saito Т., Sugimoto A., Maeda Т., Okada Y. (1987). Function of the 30-kDa protein of tobacco mosaic virus: involvement in cell-to-cell movement and dispensability for replication. EMBOJ. 6, 2557−2563
- Moore P.J., Fenczik C.A., Deom C.M., Beachy R.N. (1992). Developmental changes in the structure of plasmodesmata in transgenic tobacco expressing the movement proteins of tobacco mosaic virus. Protoplasma. 170, 115−127
- Namba K., Pattanaek R., Stubbs G. (1989). Visualisation of intact tobacco mosaic virus at 2,8 A0 resolution dy X-ray fiber diffraction. J. Mol. Biol. 208, 307−325.
- Nelson R. S., Powell Abel P., and Beachy R. N. (1987). Lisions and accumulation in inoculated transgenic plants expressing the coat protein gene of tobacco mosaic virus. Virology. 158, 126−132.
- Nishiguchi M., Kikuchi S., Kiho Y., Ohno Т., Meshi Т., Okada Y. (1985). Molecular basis of plant viral virulence- the complete nucleotide sequence of an attenuated strain of tobacco mosaic virus. Nucleic Acids Res. 13, 55 855 590.
- Novikov V.K., Belenovich E.V., Dobrov E.N., Zavriev S.K. (2000). Kazakh strains of tobacco mosaic virus: two strains with potentially destabilizing amino acid substitutions in the coat protein. Physiol. Mol. Plant Pathol. 56, 71−77.
- Ohno Т., Okada Y., Nomomura Y., Inoue H. (1975). Disk aggregtes of cucumber green mottle mosaic virus protein and its function. J. Biochem. 77, 313−319.
- Ohno Т., Aoyagi M., Yamanashi Y., Saito H., Ikawa S., Meshi Т., Okada Y. (1984). Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and comparison with the common strain genome. J Biochem (Tokyo). 96, 1915−1923.
- Osman T.A., Buck K.W. (1996). Complete replication in vitro of tobacco mosaic virus RNA by a template-dependent, membrane-bound RNA polymerase. J Virol 70, 6227−6234.
- Padgett H. S. and Beachy R. N. (1993). Analysis of a tobacco mosaic virus strain capable of overcoming N-gene-mediated resistance. Plant Cell. 5, 577 586.
- Pelham H.R., Jackson R.J. (1976) An efficient mRNA-dependent translation system from reticulocyte lysates. Eur. J. Biochem. 67, 247−256.
- Pelham H. R. B. (1978). Leary UAG termination codon in tobacco mosaic virus RNA. Nature (London). 272, 469.
- Powell Abel P., Nelson R. S., De В., Hoffman N., Rogers S., G., Fraley R. Т., and Beachy R. N. (1986). Delay of desiase development in transgenic plants that express the tobacco mosaic virus coat protein. Science. 232, 738−743.
- Powell P.A., Stark D.M., Sanders P.R., Beachy R.N. (1989). Protection against tobacco mosaic virus in transgenic plants that express tobacco mosaic virus antisense RNA. Proc. Natl. Acad. Sci. USA. 86, 6949−6952.
- Powell P. A., Sanders P. R., Turner N., Fraley R. Т., and Beachy R. N. (1990). Protection against tobacco mosaic virus infection in transgenic plants requires accumulation of coat protein rather than coat protein RNA sequence. Virology. 175, 124−130.
- Reichel C. and Beachy R.N. (1998). Tobacco mosaic virus infection induces severe morphological changes of the endoplasmic reticulum. Proc. Natl. Acad. Sci. USA. 95, 11 169−11 174.
- Reynolds E.S. (1963). The use of lead citrate at high pH as an electron opaque stain in electron microscopy. J. Cell Biol. 17, 208−212.
- Rosanov M.N., Koonin E.V., Gorbalenia A.E. (1992). Conservation of the putative methyltransferase domain: a halmark of the «Sindbis-like» supergroup of positive-strand RNA viruses. J. Gen. Virol. 73, 2129−2134.
- Saito Т., Yamanaka K. and Okada Y. (1990). Long-distance movement and viral assembly of tobacco mosaic virus mutants. Virology. 176, 329−336.
- Sanger F., Nicklen S., Coulson A.R. (1977). DNA sequencing with chain terminating inhibitors. Proc. Natl Acad. Sci USA. 74, 5463−5467.
- Sambrook J., Fritch E.F. and Masniatis T. Molecular cloning: a laboratory manual, 2nd edn. New York: Cold Spring Harbor Laboratory, 1989.
- Siegel A., Zaitlin M., Sehgal O.P. (1962). The isolation of defective tobacco mosaic virus strain. Proc. Natl Acad. Sci. USA. 48, 1845−1851.
- Siegel A., Hari V., Montgomery I., Kolacz K. (1976). A messenger RNA for capsid protein isolated from tobacco mosaic virus-infected tissue. Virology. 73,363−371.
- Siegel A., Hari V., Kolacz K. (1978). The effect of tobacco mosaic virus infection on host and virus-specific protein synthesis in protoplasts. Virology. 85,494−503.
- Skuzeski J. M., Nichols L. M., Gesteland R.F., and Atkins J. F. (1991). The signal for a leacu UAG stop codon in several plant viruses includes the two downstream codons. J. Mol. Biol 218, 365−373.
- Sleat D.E., Gallie D.R., Jefferson R.A., Bevan M.W., Turner P.C., Wilson T.M. (1987). Characterisation of the 5-leader sequence of tobacco mosaic virus RNA as a general enhancer of translation in vitro. Gene. 60, 217−225.
- Solis I., Garsia-Arenal F. (1990). The complete nucleotide sequence of the genomic RNA of the tobamovirus tobacco mild green mosaic virus. Virology. 177, 553−558.
- Steckert J.J., Schuster T.M. (1982). Sequence specificity of trinucleoside difosphate binding to polymerized tobacco mosaic virus protein. Nature. 299, 32−36.
- Tabor S. and Richardson Ch.C. (1987). DNA sequence analysis with a1. J*modified bacteriophage T7 polymerase. Proc. Natl Acad. Sci. USA. 84, 47 674 772.
- Takamatsu N., Ohno Т., Meshi Т., Okada Y. (1987). Expression of bacterial chloramfenicol acetyltransferase gene in tobacco plants mediated by TMV RNA. EMBOJ. 6, 307−311.
- Takamatsu N., Watanabe Y., Meshi Т., Okada Y. (1990). Mutational analysisof the pseudoknot region in the 3' noncoding region of tobacco mosaic virus RNA. J. Virol 64, 3686−3693.
- Takamatsu N., Ohno Т., Meshi T. and Okada Y. (1993). Molecular cloning and nucleotide sequence of 30K and coat protein cistron of TMV (tomato strain) genome. Nucl. Acids Res. 11, 3767−3778.
- Taraporewala Z.F., Culver J.N. (1996). Identification of an elicitor active site within the three-dimensional structure of the tobacco mosaic tobamovirus coat protein. Plant Cell 8, 169−178.
- Tomenius K., Clapham D., and Meshi T. (1987). Localisation by immunogold cytochemistry of the virus-coded 30K protein in plasmodesmata of leavesinfected with tobacco mosaic virus. Virology. 160, 363−371.
- Ugaki M., Tomiyama M., Kakutani Т., Hidaka S., Kiguchi Т., Nagata R., Sato Т., Motoyoshi F., Nishiguchi M. (1991). The complete nucleotide sequence of cucumber green mottle mosaic virus (SH strain) genomic RNA. J. Gen. Virol. 72,1487−1495.
- Van Belkum A., Abrahams J.P., Pleij C.W., Bosch L. (1985). Fivepseudoknots are present at the 204 nucleotides long 3' noncoding region of tobacco mosaic virus RNA. Nucleic Acids Res. 13, 7673−7686.
- Waigmann E. and Zambrovski P. (1995). Tobacco mosaic virus movement protein-mediated protein transport between trichoma cells. The Plant Cell 7, 2069−2079.
- Watanabe Y., Emori Y., Ooshika I., Meshi Т., Ohno T. and Okada Y. (1984). ^ Sinthesis of TMV-specific RNAs and proteins at the early stage of infection intobacco protoplasts: Transient expression of the 30K protein and its mRNA. Virology. 133, 18−24.
- Weber H., Haeckel P. and Pfitzner A.J.P. (1993). A cDNA clone of tomfto mosaic virus is infections in plants. J. Virol. 66, 3909−3912.
- Webster R., Granoff A. Enciclopedia of virology plus. Copyright Academic Press. 1995.
- Wilson T.M.A. (1984). Cotranslational disassembly of tobacco mosaic virus in vitro. Virology. 137,371−384.
- Wittman-Liebold В., Wittman H.G. (1963). Die primare Structure von Stammen des Tabakmosaikvirus. Amino Saure Sequenzen des Proteins des Tabakmosaikvirus stammes Dahlemense. Tiel III: Diskussion der Ergebnisse.
- Z. Vererbungsl. 94, 427−435.
- Wolf S., Deom С. M., Beachy R. N., and Lucas W. L. (1989). Movement protein in tobacco mosaic virus modifies plasmodesmatal size exclusion limit. Science. 246,377−379.
- Wu X., Shaw J.G. (1996). Bidirectional uncoating of the genomic RNA of a helical virus. Proc. Natl Acad. Sci. USA. 93, 2981−2984.
- Wu X., Shaw J.G. (1997). Evidence that a viral replicase protein is involved in the disassembly of tobacco mosaic virus particles in vitro. Virology. 239, 426 434.
- Young N., Forney J., Zaitlin M. (1987). Tobacco mosaic virus replicase and replicative structures. J. Cell. Sci. Suppl. 7, 277−285.