Конформационная динамика альфа-фетопротеина, его пептидных фрагментов и их биологическая активность
Диссертация
АФП принадлежит к семейству белков — продуктов альбуминоидных генов, к которым относятся также сывороточный альбумин (СА), витамин Д-связывающий белок (ВДСБ) и афамин. Белки этого семейства обладают сходными физико-химическими свойствами и способны связывать и транспортировать низкомолекулярные гидрофобные лиганды (эстрогены, жирные кислоты, билирубин, жирорастворимые витамины, некоторые… Читать ещё >
Список литературы
- Абелев Г. И. Изучение антигенной структуры опухолей. // Труды VIII международного противоракового конгресса. 1963. — т.З. — с. 224−227.
- Абелев Г. И. Альфа-фетопротеин: биология, биохимия, молекулярная генетика. // Иммунология. 1994. — т.З.- с.4−10.
- Вестерхофф X., ван Дам К. Термодинамика и регуляция превращений свободной энергии в биосистемах. Москва: Мир. — 1992.
- Говарикер В.Р., Висванатхан, Н.В., Шридхар Дж. Полимеры. Москва: Наука. — 1990.
- Голо В.Л., Шайтан К. В. Динамический аттрактор в термостате Берендсена и медленная динамика биомакромолекул.// Биофизика.-2002.- T.47.-C.611−617.
- Гусев А.И., Язова А. К. Выделение и очистка эмбриоспецифических а-глобулинов человека и животных методом препаративного дискового электрофореза в полиакриламидном геле. // Биохимия. 1970. — т. 35. -с. 172−181.
- Гусев А.И., Язова А. К., Полякова Е. В., Сравнение индивидуальных альфа-фетопротеинов плодов человека и больных раком печени. // Бюлл. эксп. биол. мед. 1971. -№ 3. — с. 69−72.
- Дашевский В.Г. Конформации органических молекул. Москва: Химия. -1974.
- Жабин С.Г., Терентьев A.A., Горин B.C. Макроглобулины плазмы крови: структура, биологическая активность, клиническое использование. Новосибирск. 1999.
- Зорин Н. А, Кривоносое С. К., Зорина P.M., Терентьев A.A., Ионова Н. К. Конкурентное ингибирование углеводами реакций между фитогемагглютинином, А и гликопротеинами плазмы крови. // Вопр. мед. химии. -1986. т.32 — № 6 — с. 96−98.
- Казимирский А.Н., Салмаси Ж. М., Семенова Л.Ю. Наджиорум Нгам
- Асра, Беспалова Ж. Д., Кудрявцева Е. В., Порядин Г. В., Терентьев A.A.308
- Индукция рецептора активационного апоптоза CD95 под влиянием альфа-фетопротеина человека и его поверхностного пептида АФП 13.19. // Вестник РГМУ. -2003. т.З. — № 29.- с.48−56.
- Кривоносов С.К., Зорин H.A., Ионова Н. К., Терентьев A.A., Татаринов Ю. С. Взаимодействие белков беременности с фитогемагглютинином Р и конканавалином, А (Кон А). // Бюлл. эксп. биол. мед. 1985. -т .5. -с.568−571.
- Лазаревич Н.Л. Молекулярные механизмы экспрессии гена альфа-фетопротеина. // Биохимия. 2000. — т.65. — № 1. — с.117−133.
- Ли А., Кирпичников М. П. Динамический молекулярный дизайн био- и наноструктур. // Росс. Хим. Журн. 2006. — т.50. — № 2. — с.53−65.
- Нарыжнева Н.Г., Иванова Т. В., Томашевский А. Ю., Уверский В. Н. Сравнительный анализ структур гомологичных белков сывороточного альбумина и альфа-фетопротеина человека. // Мол. Биол. -1997. — т.31. -№ 6.-с. 1043−1048.
- О’Конор Г. Т., Татаринов Ю. С., Абелев Г. И., Уриель Ж. Комплексное иссследование по оценке серологического теста для диагностики первичного рака печени. // Вестн. АМН СССР. 1971. — № 3. — с.3−11.
- Попов Е.М. // Проблема белка. Т. З. Структурная организация белка. -Москва: Наука. -1997.
- Порядин Г. В., Салмаси Ж. М., Казимирский А. Н., Семенова Л. Ю. Механизмы участия иммунной системы в развитии воспаления. // Клиническая патофизиология. 2004. — № 4. — С. 3−9.
- Северин С.Е., Кулаков В. Н., Москалева Е. Ю., Северин Е. С., Слободяник И. И., Климова Т. П. Распределение 1125-меченного альфа-фетопротеина в животных организмах и его накопление в опухолевой ткани. // Вестн. Росс. Акад. Мед. Наук. 2012 — № 4. — с. 11−15.
- Татаринов Ю.С. Обнаружение эмбриоспецифического альфа-глобулина в сыворотке крови больных первичным раком печени. // 1-ый Всесоюзный биохимический съезд. Москва-Ленинград, АН СССР. -Тезисы. -1963. — № 2. — с. 274.
- Татаринов Ю.С. Содержание эмбриоспецифичекого альфа-глобулина в сыворотке крови плода человека, новорожденных и взрослых людей при первичном раке печени. // Вопр. мед. химии. -1965. т.11. — с.20−24.
- Татаринов Ю.С., Терентьев A.A., Молдогазиева Н. Т., Тагирова А. К., Казимирская В. А., Пугачева О. Г. Карта структуры альфа-фетопротеиначеловека (АФП) и его полифункциональность как иммуномодулятора. // Мед. иммунол. -2004. т.6. — № 3−5. — с.255−256.
- Терентьев A.A. Выявление гомологичных последовательностей в первичных структурах альфа-фетопротеина и некоторых онкофетальных белков человека. // Вестн. РГМУ. -1999. -т .4. № 9. — с.24−27.
- Терентьев A.A. Структурные предпосылки участия в регуляции клеточного цикла альфа-фетопротеина (АФП) и трансформирующего фактора роста (TGF-?). // Мед. иммунол. -2004. т.6. -№. 3−5. — с.256.
- Терентьев A.A. Структурно-функциональные аналогии молекул альфа-фетопротеина (АФП) и трансформирующего фактора роста (TGF-? 1) человека. // Rus. J. Immunol. -2004. v.9. Suppl. 1. — p.55.
- Терентьев A.A., Молдогазиева H.T., Тагирова A.K., Татаринов Ю. С. Аффинная хроматография альфа-фетопротеина человека на иммобилизованных эстрогенах. // Бюлл. эксп. биол. мед. -1988. -т.4. -с.422124.
- Терентьев A.A., Молдогазиева Н. Т., Татаринов Ю. С. Конкурентная аффинная хроматография альфа-фетопротеина человека на иммобилизованном диэтилстильбэстроле. // Бюлл. эксп. биол. мед. -1990.-Т.5.-С.438−440.
- Терентьев A.A., Молдогазиева Н. Т., Татаринов Ю. С. Аффинная хроматография альфа-фетопротеинов мыши и крысы на иммобилизованном диэтилстильбэстроле. // Бюлл. эксп. биол. мед. -1992,-т.6.-с.588−590.
- Терентьев A.A. Выявление гомологичных участков в первичных структурах альфа-фетопротеина, инсулина и некоторых факторов роста. //Вестн. РГМУ. 1997. -Т.1. -№ 3. — с.76−79.
- Терешкина К. Б., Шайтан К. В., Левцова О. В., Голик Д. Н. Молекулярная динамика олигопептидов 6. Сравнительное изучение сечений Пуанкаре монопептидных структур в средах с различной гидрофобностью. // Биофизика. 2005. — т.50. — № 6. — с.974−985.
- Фельдман Н.Б., Киселев С. М., Гукасова Н. Б., Посыпанова Г. А., Луценко C.B., Северин С. Е. Противоопухолевая активность коньюгата альфа-фетопротеина с доксорубицином in vitro и in vivo. II Биохимия. 2000. -т. 65.-№ 8.-с. 967−971.
- Финкелынтейн A.B., Птицын О. Б. Физика белка. — Москва: Книжный Дом Университет. 2005.
- Челиа В., Бландел Т. Оценка структурных и функциональных ограничений аминокислотных замен в эволюции белков. // Биохимия. -2005. т.70. — № 8. — с. 1013−1020.
- Черешнев В.А., Родионов С. Ю., Черкасов В. А., Малютина H.H., Орлов O.A. //Альфа-фетопротеин. Екатеринбург: Уро РАН. — 2004. — 376с.
- Шайтан К.В., Турлей Е. В., Голик Д. Н., Терешкина К. Б., Левцова О. В., Федик И. В., Шайтан А. К., Кирпичников М. П. Молекулярная динамика и дизайн био- и наноструктур. // Вестн. биотехнол. физ-хим. биол. 2005. -т.1. — № 1. -с.66−78.
- Шайтан К.В., Рубин А. Б. Конформационная динамика белков и простейшие молекулярные «машины». // Биофизика. 1982. — т.27. -№ 3. — с.386−390.
- Шайтан К.В., Ермолаева М. Д., Балабаев Н. К., Лемак A.C., Орлов М. В. Молекулярная динамика олигопептидов 2. Динамические корреляционные функции конформационного поведения модифицированных дипептидов. // Биофизика. -1997b. т.42. — № 3. -с.558−566.
- Шайтан К.В., Ермолаева М. Д., Сарайкин С. С. Молекулярная динамика олигопептидов 3. Карты уровней свободной энергии в модифицированных дипептидах и динамическая корреляция в аминокислотных остатках.// Биофизика. -1999. -т.44. -№ 1. с. 18−21.
- Шайтан К.В., Милославский Ф. Я., Беляков A.A., Сарайкин С. С. Статистическое распределение дипептидов в белковых структурах идинамические характеристики некоторых белковых фрагментов.// Биофизика. 2000. — т.45. — № 3. — с.399−406.
- Шайтан К.В., Михайлюк М. Г., Леонтьев К. М., Сарайкин С. С., Беляков А.А Молекулярная динамика флуктуаций во вторичной структуре белков. // Биофизика. -2002. -т.47. -№ 3. с.411−409.
- Шайтан К.В., Михайлюк М. Г., Леонтьев К. М., Сарайкин С. С., Беляков А. А. Влияние дисульфидных связей на динамику лизоцима. // Биофизика. -2003. т.48. — № 2. — с.210−216.
- Шатаева Л.К., Ряднов И. Ю., Хавинсон В. Х. Исследование информационной ценности олигопептидных блоков в регуляторных пептидах и белках. // Успехи совр. биол. -2002. т. 122. — № 3. — с.281−288.
- Якименко Е.Р., Язова А. К., Гусев А. И., Абелев Г. И. Эпитопное картирование альфа-фетопротеина человека. // Биохимия. 2001. — т.66. -№ 5. — с.524−530.
- Abelev G.I., Perova S., Khramkova N.I., Postbikova Z., A., Irlin I.S. Production of embryonic alpha-globulin by the transplantable mouse hepatomas. // Transplantation. 1963. -v. 1-p. 174−180.
- Abelev G.I. Alpha-fetoprotein in ontogenesis and its association with malignant tumors. // Adv. Cancer Res. -1971. v.14. — p. 295−358.
- Abelev, G.I., Alpha-fetoprotein: the genesis.// Oncodev.Biol.Med. 1983. -v.4. -p.371−381.
- Achaz G., Coissac E., Netter P., Rocha E.P. Associations between inverted repeats and structural evolution of bacterial genomes. // Genetics. 2003. -v.164. -N.4. — p.1279−1289.
- Adamson E.D., Minchiotti G. P., Salomon D.S. Cripto: a tumor growth factor and more. // J. Cell. Physiol. 2002. — v. 190 — p. 267−278.
- Ahram, M., Petricoin, E.F. Proteomics discovery of disease biomarkers.// Biomarker Insights. 2008. — v.3. — p. 325−333.
- Alava M.A., Sturralde M., Lampreave F., Pineiro A. Specific uptake of alpha-fetoprotein and albumin by rat Morris 777 Hepatoma cells. // Tumor Biol. -1999. v.20. — p. 52−64.
- Albert R. Scale-free networks in cell biology. // J. Cell Sci. 2005. — v. l 18. -p.4947−4957.
- Albert R., Barabasi A.L. Statistical mechanics of complex networks. // Rev. Mod. Phys. 2002. — v.74. — p. 47−97.
- Aldenderfer, M.S., Blashfield, R.K. Cluster analysis. Los Angeles. Sage Publications. -1985.
- Alexander P.A., He Y., Chen Y., Orban J., Bryan P.A. The design and characterization of two proteins with 88% sequence identity but different structure and function. // Proc.Natl. Acad. Sci. USA. 2007. — v. 104. — N.29. -p. 11 963−11 968.
- Alexander, P.A., He, Y., Chen, Y., Orban, J., Bryan, P.N. A minimal sequence code for switching protein structure and function. // Proc. Natl. Acad. Sci. USA. 2009. — v. 106. — p. 21 149−21 154.
- Alisa A., Bouswell S., Pathan A.A., Ayaru L., Williams R., Behboudi S. Human CD4+ T cells recognize an epitope within alpha-fetoprotein sequence and develop into TGF-producing CD4+ T cells. // J. Immunol. 2008. -v. 180.-p. 5109−5117.
- Allen S.H.G., Bennett J.A., Mizejewski G.J., Andersen T.T., Ferraris S. Jacobson H.I. Purification of human alpha-fetoprotein from human cord serum with demonstration of its antiestrogenic activity. // Biochim. Biophys. Acta. 1993.-v. 1202.-p. 135−142.
- Alon U. Network motifs: theory and experimental approaches. // Nat. Rev.Genet. 2007. — v.8. — N.6. — p. 45061.
- Alpert E., Dienstag J.L., Sepersky S., Littman B., Rocklin R. Immunosupressive characteristic of human AFP: effect on tests of cell mediated immunity and induction of human suppressor cell. // Immunol. Commun. 1978. — v.7. — p. 163−185.
- Altschul S.F. Amino acid substitution matrices from an information theoretic perspective. //J. Mol. Biol. 1991. — v. 219. -N.3.-p.555−565
- Altschul S.F., Madden T.L., Schaffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. // Nucleic Acids Res. -1997. v.25. — p. 33 893 402.
- Andrews G.K., Dziadek M. and Tamaoki T. Expression and methylation of the mouse alpha-fetoprotein gene in embryonic, adult, and neoplastic tissues. //J. Biol. Chem. -1982. v.257.-p. 5148−5153.
- Aoyagi Y., Ikenaka T., Ishida F. Copper (Il)-binding ability of human alpha-fetoprotein. // Cancer Res. -1978. v.38. — p. 3483−3486.
- Aoyagi Y., Ikenaka T., Ichida F. Alpha-fetoprotein as a carrier protein in plasma and its bilirubin-binding ability. // Cancer Res. -1979. v.39. -p. 3571−3574.
- Appella E., Weber I.T., Blasi F. Structure and function of epidermal growth factor-like regions in proteins. // FEBS Lett. 1988. — v.231. -N.l. — p. 1−4.
- Arcot S.S., Adamson A.W., Lamerdin JE, Kanagy B, Deininger PL, Carrano A.V., Batzer M.A. Alu fossil relics distribution and insertion polymorphism. // Genome Res. — 1996. — v.6. — p. 1084−1092.
- Ascenzi P., Bocedi A., Notari S., Fanali G., Fesce R. Fasano M. Allosteric modulation of drug binding to human serum albumin. // Mini Rev. Med. Chem. 2006. — v.6. — p. 483−489.
- Assa-Munt N., Jia X., Laakkonen P., Ruoslahti E. Solution structures and integrin binding activities of an RGD peptide with two isomers. // Biochemistry. -2001. -v.40. -N.8. p. 2373−2378.
- Assoian RK. Anchorage-dependent cell cycle progression. // J. Cell Biol. -1997.-v.136.-p.
- Atemezem A., Mbemba E., Marfaing R., Vaysse J., Pontet M., Saffar L., Charnaux N., Gattegno L. Human alpha-fetoprotein binds to primary macrophages. // Biochem. Biophys. Res. Commun. 2002. — v.296. — N.3. -p.507.
- Altaf-Ul-Amin M., Shinbo Y., Mihara K., Kurokawa K., Kanaya S. Development and implementation of an algorithm for detection of protein complexes in large interaction networks. // BMC Bioinformatics. 2006. -v.7. -p.207.
- Aussel C, Masseyeff R. Alpha-fetoprotein and estrogen metabolism. Influence of alpha-fetoprotein on the metabolism of steroids by rat liver microsomes in vitro. //Biochimie. 1976. — v.58. — p. 737−741.
- Aussel C, Masseyeff R. Human alpha-fetoprotein-fatty acid interaction.// Biochem. Biophys. Res. Commun. -1983. v.115. -N.l. — p. 38−45.
- Aussel C., Negrel L. Effect of AFP on arachidonic acid metabolism in the preadipocyte cell line OB-17. // Prostaglandins Leucotriene Med. 1986. -v.21. — p. 69−76.
- Austin R.S., Provart N.J., Cutler S.R. C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families. // BMC Genomics. 2007. — v.8. -p.191.
- Bader G. D., Betel D., Vogue C. W. VBIND the Biomolecular Interaction Network Database.// Nucleic Acids Res. -2003. -v.31. — N. 1. -p.248−250.
- Bader S., Kuhner S., Gavin A.C. Interaction networks for systems biology.// FEBS Lett. 2008. — v.582. -N.8. -p.1220−1224.
- Bailey T.L., Williams N., Misleh C., Li W. W. MEME: discovering and analyzing DNA and protein sequence motifs. // Nucleic Acids Res. 2006. -34.-p. W360−373.
- Baker M.E., Morris C.S., Fanestil D.D. Binding of the chymotrypsin substrate, tryptophan methyl ester, by rat alpha-fetoprotein. // Biochem. Biophys. Acta. -1980. v.632. -N.4. -p. 611−618.
- Baker D., Sali A. Protein structure prediction and structural genomics. // • Science. 2001. — v.294. — p. 93−96.
- Barabasi A. L., Oltvai Z. N. Network biology: understanding the cell’s functional organization. // Nat. Rev. Genet. 2004. — v.5. — p.101 — 113.
- Barker M. E. Evolution of alpha-fetoprotein: sequence comparisons among AFP species and with albumin species. // Tumor Biol. 1988. — v.9. — p. 123— 136.
- Bartha J.L., Comino-Delgado R., Arce F., Alba P., Broullon J.R., Barahona M. Relatioship between alpha-fetoprotein and fetal erythropoiesis. // J. Reprod. Med. 1999. — v.44. — p. 689−697.
- Bartha J.L., Romero-Carmona R., Comino-Delgado R., Arce F., Arrabal J. Alpha-fetoprotein and hemopoietic growth factors in amniotic fluid. // Obst. Gynecol. 2000. — v.96. — p. 588−592.
- Baumeister, W. From proteomic inventory to architecture. // FEBS Lett. -2005. v.579. — N.4. — p. 933−937.
- Beatie W.G., Dugaiczyk A. Structure and evolution of human alpha-fetoprotein deduced from partial sequence of cloned cDNA. // Gene. 1982. -v.20.-p. 415−422.
- Bellini C., Bonacci W., Paridu E., Sera G. Serum alpha-fetoprotein in newborns. // Clin. Chem. 1998. — v.44. — p. 2548−2550.
- Belayew A., Tilghman S.M. Genetic analysis of alpha-fetoprotein synthesis in mice. // Mol. Cell. Biol. -1982. v.2. — p. 1427−1435.
- Benassayag C., Vallette G., Cittanova N., Nunez E., Jayle M.F. Isolation of two forms of rat alpha-fetoprotein and comparison of their binding parameters with estradiol-17(3. // Biochim. Biophys. Acta. 1975. — v.412. — p. 295−305.
- Benassayag C., Savu L., Valette G., Delorme J., Nunez E.A. Relations between fatty acids and oestrogen binding properties of pure rat alpha-1-foetoprotein. // Biochim. Biophys. Acta. -1979. v.587. -N.2. — p. 227−237.
- Bennett J.A., Semeniuk D.J., Jacobson H.I., Murgita R.A. Similarity between natural and recombinant human alpha-fetoprotein as inhibitors of estrogen-dependent breast cancer growth. // Breast Cancer Res. Treat. -1997. v.45. -N.2. — p. 169−179.
- Bennett J.A., Zhu S., Pagano-Mirarchi A., Kellom T.A., Jacobson H.I. Alpha-fetoprotein derived from a human hepatoma prevents growth of estrogen-dependent human breast cancer xenografts. // Clin. Cancer Res. -1998. v.4. -p. 2877−2884.
- Bennett J.A., Defreest L., Anaka I., Saadati H., Balulad S., Jacobson H.I., Andersen T.T. AFPep: an anti-breast cancer peptide that is orally active. // Breast Cancer Res.Treat. -2006. v.98. — p. 133−141.
- Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank. // Nucleic Acid Res. (Database issue). 2008. — D25−30.
- Benson M., Breitling R. Network theory to understand microarray studies of complex diseases. // Curr. Mol. Med. 2006. — v.6. -p.695−701.
- Berde C.B., Nagai M., Deutsch H.F. Human alpha-fetoprotein. Fluorescence studies on binding and proximity relationships for fatty acids and bilirubin. // J. Biol. Chem. 1979. — v.254. — p. 12 609−12 614.
- Berendsen H.J.C., van der Spoel D., van Drunen R. Gromacs a message-passing parallel molecular-dynamics implementation. // Comp. Phys. Comm. -1995.-v.91.-p. 43−56.
- Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., Hermans J. Intermolecular forces. Reidel, Dordrecht. — 1981.
- Berendsen H.J.C., Postma J.P.M., van Gunsteren W.F., DiNola A., Haak J.R. Molecular dynamics with coupling to an external bath. // J. Chem. Phys. -1984.-v.81.-p. 3684−3690.
- Bergstrand C.G., Czar B. Demonstration of a new protein fraction in serum from the human fetus. // Scan. J. Clin. Lab. Invest. -1956. -v.8. -p. 174−176.
- Berman H.M., Westbrook J., Feng Z" Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The protein data bank. // Nucleic Acids Res. -2000.-v.28.-p. 235−242.
- Berman H. M., Henrick K., Nakamura H. Announcing the worldwide Protein Data Bank. // Nat. Struct. Biol. -2003. -v. 10. -p.980−989.
- Betts, M.J., Russell, R.B. The hard cell: From proteomics to a whole cell model. // FEBS Lett. 2007. — v.581. — N.15. — p. 2870−2876.
- Bhattacharya, A.A., Curry, S., Franks, N.P. Binding of the general anesthetics propofol and halothane to human serum albumin. High resolution crystal structures. // J. Biol. Chem. 2000. — v.275. — N.49. — p. 3 873 138 738.
- Bhattacharya R., Pal D., Chakrabarti P. Disulfide bonds, their stereospecific environment and conservation in protein classess. // Protein Engineer. Design Select. 2004. — v. 17. — N. 11. — p. 795−808.
- Bianco C., Strizzi L., Normanno N., Khan N., Salomon D.S. Cripto-1: an oncofetal gene with many faces. // Curr. Top. Dev. Biol. 2005. — v. 67. — p. 85−133.
- Bianco C., Normanno N., Salomon D. Ciardiello F. Role of the cripto (EGF-CFC) family in embryogenesis and cancer. // Growth factors. 2004. — v. 22. -p. 133−139.
- Binder R., Kress A., Kan G., Herrmann K., Kirschflnk M. Neutrophil priming by cytokines and vitamin D-binding protein (Gc- globulin): impact on C5a-mediated chemotaxis, degranulation and respiratory burst. // Mol. Immunol. -1999. v.36. — p.885−892.
- Birkenmeier G., Usbeck E., Saro L., Kopperschlager G. Triazine dye binding of human alpha-fetoprotein and albumin. // J. Chromatograph. 1983. -v.265. — p. 27−35.
- Bissell D. M, Roulot D., George J. Transforming growth factor beta and the liver. // Hepatology. 2001. — v.34. — p. 859−867.
- Boeckmann B., Blatter M.-C., Famiglietti L., Hinz U., Lane L., Roechert B., Bairoch A. Protein variety and functional diversity: Swiss-Prot annotation in its biological context.// Comptes Rendus Biologies. 2005. — v.328. — p. 882 899.
- Boggon T.J., Eck, M.J. Structure and regulation of Src family kinases.// Oncogene. -2004. -v.23. p. 7918−7927.
- Bohn H. Detection and characterization of pregnancy proteins in the human placenta and their quantitative immunochemical determination in sera from pregnant women. // Arch. Gynakol. 1971. — v.210. — p. 440−457.
- Boismenn R., Semeniuk D., Murgita R.A. Purification and characterization of human and mouse recombinant alpha-fetoprotein expressed in Escherichia coli. II Protein Expres. Purif. 1997. — v. 10. — N. 1. — p. 10−26.
- Bomar M.G., Pai M.T., Tzeng S.R., Li S.S., Zhou P. Structure of ubiquitin-binding zinc finger domain of human DNA Y-polymerase eta. // EMBO Rep. 2007. — v.8. — N.3. — p. 247−251.
- Bose R., Holbert M.A., Pickin K.A. and Cole P.A. Protein tyrosine kinase-substrate interactions.// Curr. Opin. Struct. Biol. -2006. -v.16. -p.668−675.
- Boyum A. Separation of lymphocytes from blood and bone marrow. // Scand. J. Lab. Invest. 1968. — v.21 (Suppl. 97). — p. 9−109.
- Braun A., Kofler A., Morawietz S., Cleve H. Sequence and organization of the human vitamin D-binding protein gene. // Biochim. Biophys. Acta. -1993.-v.1216.-p. 385−394.
- Breborowich J. Microheteroheneity of human alpha-fetoprotein. // Tumor Biol. 1988. — v.9. — p. 3−14.
- Brock D.J., Scrimgeour J.B., Nelson M.M. Amniotic fluid alpha-fetoprotein measurements in the prenatal diagnosis of central nervous system disorders. // Genetics. 1975. — v.7. — p. 163−169.
- Brohee S., van Helden J. Evaluation of clustering algorithms for proteinprotein interaction networks. // BMC Bioinformatics. 2006. — v.7. — p.488.
- Brown J.R. Structural origins of mammalian albumin. // Fed. Proc. 1976. -v.35.-p. 2141−2144.
- Brown, K.R., Jurisica, I. Online predicted human interaction database. // Bioinformatics. -2005. -v.21. p. 2076−2082.
- Brownbill P., Edwards D. and Jones C. et al. Mechanisms of alpha-fetoprotein transfer in the perfused human placental cotyledon from uncomplicated pregnancy. // J. Clin. Invest. 1995. — v.96. — p. 2220−2226.
- Brummendorf T. and Rathjen F. G. Cell adhesion molecules 1: immunoglobulin superfamily. // Prot. Profile. 1994. — v.l. — p. 951−1058.
- Burgard A.P., Moore G.L., Maranas C.D. Review of the TEIRESIAS-based tools of the IBM Bioinformatics and Pattern Discovery Group. // Metab. Eng. -2001. v.3. — p. 285−288.
- Butterfield L.H. Recent advances in immunotherapy for hepatocellular cancer. // Swiss Med. WKLY. 2007. — v. 137. — p. 83−90.
- Butterstein G., Morrison J., Mizejewski G.J. Effect of alpha-fetoprotein and derived peptides on insulin and estrogen-induced fetotoxicity. // Fetal Diagn. Ther. -2003. v. 18. -N.5. — p. 360−369.
- Bychkova V.E., Pain R.H., Ptitsyn O.B. The «molten globule» state involved in the translocation of proteins across membranes. // FEBS Letts. 1988. -v.238. — p. 231−234.
- Bychkova V.E., Ptitsyn O.B. Folding intermediates are involved in genetic diseases. // FEBS Letts. 1995- v.359. — p. 6−8.
- Camenisch G., Pisabarro M.T., Sherman D. ANGPTL3 stimulates endothelial cell adhesion and migration via integrin avp3 and induces blood vessel formation in vivo. // J. Biol. Chem. 2002. — v.277. — p. 17 281−17 290.
- Carerres G., Dauphinee M.J., Eisele L.E., MacColl R., Mizejewski G.J. Antiprostate cancer and anti-breast cancer activities of two peptides derived from alpha-fetoprotein. // Anticancer Res. 2002. — v.22. — p. 2817−2820.
- Carlini P., Ferranti P., Polizio F., Ciriolo M.R., Rotilio G. Purification and characterization of alpha-fetoprotein from the human hepatoblastoma HepG2 cell line in serum-free medium. // Biometals. 2007. — v.20. — p. 869−878.
- Carmeliet P. Angiogenesis in health and disease. // Nat. Med. 2003. — v.9. -p. 653−660.
- Carraway, K.L.L., Burden, S.J. Neuregulins and their receptors. // Curr. Opin. Neurobiol. 1995. — v.5. — p. 606−612.
- Caruso M.L., Valentini A.M. Overexpression of p53 in a large series of patients with hepatocellular carcinoma: a clinicopathological correlation. // Anticancer Res. 1999. — v. 19. — p. 3853−3586.
- Case D.A., Cheatham III Т.Е., Darden Т., Gohlke H., Lou R., Merz Jr. K.M., Onufriev A., Simmerling C., Wang В., Woods R.J. The Amber biomolecular simulation programs. // J.Comput. Chem. -2005. v.26. — p. 1668−1688.
- Castro A., Bernis C., Vigneron S., Labbe J.C. and Lorca T. The anaphase-promoting complex: a key factor in the regulation of cell cycle. // Oncogene. -2005.-v.24.-p. 314−325.
- Cesareni G., Panni S., Nardelli G., Castagnoli L. Can we infer peptide recognition specificity mediated by SH3 domains? // FEBS Letts. 2002. -v.513. —p. 38−44.
- Cesareni G. Modular Protein Domains. Wiley-Verlag. — 2004.
- Chan M.H., Shing M.M., Poon T.C., Johnson P.J., Lam C.W. Alpha-fetoprotein variants in a case of pancreatoblastoma. // Ann. Clin. Biochem. -2000.-v.37.-p. 681—685.
- Chang, H., Brown, C.W., Matzuk, M. Genetic analysis of the mammalian transforming growth factor-beta superfamily. // Endocr. Rev. 2002. — v.23. -N6. -p.787−823.
- Chen J., Yuan B. Detecting functional modules in the yeast protein-protein interaction network. // Bioinformatics. 2006. — v.22. — N.18. — p. 22 832 290.
- Chenna R., Sugawara H., Koike T., Lopez R., Gibson T.J., Higgins D.G., Thompson J.D. Multiple sequence alignment with the Clustal series of programs. //Nucleic Acids Res. -2003. v.31. -N.13. — p. 3497−3500.
- Cho W.C. Proteomics technologies and challenges. // Genomics Proteomics Bioinformatics. 2007. — v.5. — N.7. — p. 77−85.
- Chothia C., Lesk A.M. The relation between the divergence of sequence and structure in proteins. // EMBO J. 1986. — v.5. — p. 823−826.
- Chu L.-H., Chen B.-S. Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets. // BMC Syst. Biol.-2008.-v.2.-p.56.
- Chung J.L., Beaver J.E., Scheef E.D., Bourne P.E. Con-Struct Map: a comparative contact map analysis tool. // Bioinformatics. 2007. — v.23. -N.18. — p. 2491−2492.
- Cillo U., Navaglia F., Vitale A., Molari A., Basso D., Bassanello M. Clinical significance of alpha-fetoprotein mRNA in blood of patients with hepatocellular carcinoma. // Clin Chim Acta. 2004. — v.347. — p. 129−138.
- Coats S., Flanagan W. M., Nourse J., Roberts J. M. Requirement of p27(kipl) for restriction point control of the fibroblast cell cycle. // Science. -1996.-v.272.-p. 877−880.
- Cooke N.E., David E.V. Serum vitamin-D-binding protein is a third member of the albumin and alpha-fetoprotein gene family. // J. Clin. Invest. 1985. -v.76. — p. 2420−2424.
- Copley R.R., Doerks T., Letunic I., Bork P. Protein domain analysis in the era of complete genomes. //FEBS Lett. -2002. v.513. — p. 129−134.
- Coveney P. V., Fowler P.W. Modelling biological complexity: a physical scientist’s perspective. // J. R. Soc. Interface. 2005. — v.2. — N.4. -p.267−280.
- Cuckle H.S., Wald N.J., Lindenbaum R.H. Maternal serum alpha-fetoprotein measurement: a screening test for Down syndrome. // Lancet. 1984. — v.l. -p. 926−929.
- Curry S., Mandelkow H., Brick P., Franks N. Crystal structure of human serum albumin complexed with fatty acid reveals an asymmetric distribution of binding sites. // Nat. Struct. Biol. 1998. — v.5. — p. 827−835.
- Curry S. Beyond expansion: structural studies on the transport roles of human serum albumin. // Vox Sang. -2002. v.83. — p. 315−319.
- Cusick M.E., Klitgord M.E., Vidal M., Hill D.E. Interactome: gateway into systems biology. // Hum. Mol. Genet. 2005. — v. 14. — Spec. No.2. — R171−181.
- Daiger S.P., Schanfleld M.S., Cavalli-Sforza L.L. Group-specific component (Gc) proteins bind vitamin D and 25-hydroxyvitamin D. // Proc. Natl. Acad. Sci. USA. 1975. — v.72. — p. 2076−2080.
- Dalgarno D.C., Botfield M.C., Rickles R.J. SH3 domains and drug design: ligands, structure, and biological function. // Biopolymers. 1997. — v.43. -N.5. — p. 383100.
- Davis G.E., Senger D.R. Endothelial extra-cellular matrix: biosynthesis, remodeling and functions during vascular morphogenesis and neovessel stabilization. // Circulation Res. 2005. — v.97. — p. 1093−1107.
- Dawson, J.P., Bu, Z., Lemmon M.A. Ligand-induced structural transitions in ErbB receptor extracellular domains. // Structure. 2007. — v. 15. — N.8. — p. 942−954.
- Dauphinee M.J., Mizejewski G.J. Human alpha-fetoprotein contains potential heterodimerization motifs capable of interaction with nuclear receptors and transcription/growth factors. // Med. Hypotheses. 2002. — v.58. — p. 453 461.
- Dayhoff M.O., Schwartz R.M. Orcutt B.C. // A model of evolutionary change in proteins. Atlas Prot. Seq. Struct. 1978. — v.5. — N.3. — p.345−352.
- Debruyne E. N., Delange J.R. Diagnosing and monitoring hepatocellular carcinoma with alpha-fetoprotein: new aspects and applications. // Clin. Chim. Acta. -2008. v.395. -N.l-2. — p. 19−26.
- DeFreest L.A., Mesfin F.B., Joseph L. et al. Synthetic peptide derived from alpha-fetoprotein inhibits growth of human breast cancer: investigation of the pharmacophore and synthesis optimization. // J. Pept. Res. 2004. — v.63. — p. 409419.
- De Mees C., Bakker J., Szpizer J., Szpizer C. Alpha-fetoprotein: from a diagnostic biomarker to a key role in female fertility. // Biomarker Insight. -2007.-v.l.-p. 82−85.
- Derynck R., Akrhurt R.J., Balmain A. TGF-beta signaling in tumor suppression and cancer progression. // Nat.Genet. 2001. — v.29. — p. 117— 129.
- Derynck R., Zhang Y.E. Smad-dependent and Smad-independent pathways in TGF-beta family signalling. // Nature. 2003. — v.425. — p. 577−584.
- D’Eutachio P., Ingram R. S., Tilghman S. M., Ruddle, F. H. Murine alpha-fetoprotein and albumin: two evolutionary linked proteins encoded on the same mouse chromosome. // Somatic Cell Genet. 1981. — v.7. — p. 289−294.
- Deutsch H.F. Chemistry and biology of alpha-fetoprotein. // Adv. Cancer Res. -1991.-v.56.-p. 253−312.
- Dickerson R.E. The structure of cytochrome c and the rates of molecular evolution. //J. Mol. Evol. 1971. — v.l. — p. 26−45.
- Diella F" Haslam N., Chica C., Budd A., Michael S., Brown N.P., Trave G., Gibson T.J. Understanding eukaryotic linear motifs and their role in cell signaling and regulation. // Front. Biosci. 2008. — v.13. — p. 6580−6603.
- Dohler K.D. The pre- and postnatal influence of hormones and neurotransmitters on sexual differentiation of the mammalian hypothalamus. //Int. Rev. Cytol. 1991. — v. l31. — p. 1−57.
- Dudich E.A., Semenkova L.V., Gorbatova E.A., Dudich A.V., Khromikh
- M., Grechko G.K., Sukhikh G.T. Growth-regulative activity of human331alpha-fetoprotein for differrent types of tumor and normal cells. // Tumor Biol. 1998. — v.19. — p. 30−40.
- Dudich I., Tokhtamysheva N., Semenkova L., Dudich E., Hellman Y., Korpela T. Isolation and structural and functional characterization of two stable peptic fragments of human alpha-fetoprotein. // Biochemistry. 1999. -v.38.-p. 10 406−10 414.
- Edis C., Kahler C., Klotz W. et al. A comparison between alpha-fetoprotein and p53 antibodies in the diagnosis of hepatocellular carcinoma. // Transplant. Proc. 1998. — v.30. — p. 780−781.
- Edwards R.J., Moran N., Devocelle M., Kiernan A., Meade G., Signac W., Foy M., Park S.D., Dunne E., Kenny D., Shields D.C. Bioinformatic discovery of novel bioactive peptides. // Nat. Chem. Biol. 2007. — v.3. -N.2. — p. 108−112.
- Edwards C.H., Penney D. E. Differential Equations and Boundary Value Problems: Computing and Modeling The 3-rd edition— Mathworks Inc. -2007.
- Eilbeck K., Brass A., Paton N., Hodgman C. INTERACT: An object oriented protein-protein interaction database. In: «Intelligent Systems for Molecular Biology». Palo Alto: AAAI Press. -1999. — v.7. — p. 87−94.
- Eisele L.E., Mesfin F.B., Bennett J.A., Andersen T.T., Jacobson H.I., Soldwedel H., MacColl R., Mizejewski G.J. Studies of a growth inhibitorypeptide derived from alpha-fetoprotein and some analogs. // J. Peptide Res. -2001a.-v.57.-p. 29−38.
- Eisele L.E., Mesfin F.B., Bennett J.A., Andersen T.T., Jacobson H.I., Soldwedel H., MacColl R., Mizejewski G.J. Studies on analogs of a peptide derived from alpha-fetoprotein having antigrowth properties. // J. Peptide Res.- 2001b. v.57. — p. 539−546.
- Endoh M., Kobayashi Y., Yamakami Y., Yonekura R., Fujii M. and Ayusawa D. Coordinate expression of the human pregnancy-specific glycoprotein gene family during induced and replicative senescence. // Biogerontology. 2009.v.10. — N.2. p. 213−221.
- Engel J. EGF-like domains in extracellular matrix proteins: localized signals for growth and differentiation? // FEBS Lett. 1989. — v. 251. — N. l-2. — p. 1−7.
- Esteban C., Geuskens M., Uriel J. Activation of an alpha-fetoprotein (AFP)/receptor autocrine loop in HT-29 human colon carcinoma cells.// Int. J. Cancer. -1991. -v.49. N.3. -p.425−430.
- Eswar N., Marti-Renom M.A., Webb B., Madhusudhan M.S., Eramian D., Shen M., Pieper U., Sali A. Comparative protein structure modeling with
- MODELLER. Current Protocols in Bioinformatics, John Wiley & Sons, Inc. -2006. -Suppl. 15, 5.6.1−5.6.30.
- Fasano M., Curry S., Terreno E., Galliano M., Fanali G., Narciso P., Notari S., Ascenzi P. The extraordinary ligand binding properties of human serum albumin.// IUBMB Life. -2005. -v.57. -p.787−796.
- Fasano M., Fanali G., Leboffi L., Ascenzi P. Heme binding to albuminoid proteins is the result of recent evolution.// IUBMB Life. -2007. -v.59. N.7. -p.436−440.
- Favoni R.E., De Cupis A. The role of polypeptide growth factors in human carcinomas: new targets for a novel pharmacological approach.// Pharmacol. Rev. -2000. -v.52. N.2. -p. 179−206.
- Feng X.H., Derynck R. Specificity and versatility in TGF-beta signaling through Smads. //Ann. Rev. Cell Dev. Biol. 2005. — v.21. — p. 659−693.
- Feng D.F., Doolitle R.F. Progressive alignment and phylogenetic tree construction of protein sequences. //Methods Enzymol. — 1990. v. 183. — p. 375−387.
- Feng D.F., Doolitle R.F. Progressive alignment of amino acid sequences and construction of phylogenetic trees from them. // Methods Enzymol. 1996. — v. 266.-p. 368−382.
- Ferraro E., Via A., Ausiello G., Helmer-Citterich M. A neural strategy for the inference of SH3 domain-peptide interaction specificity.// BMC Bioinformatics. -2005. -v.6. -Suppl. 4. -S13.
- Ferrel J.E. Jr. Q&A: Systems biology. // J. Biol. -2009. -v.8. -p.2.
- Fields S., Song O. A novel genetic system to detect protein-protein interactions. //Nature. -1989. -v.340. -p.245−246.
- Fink A.L. Molten globules.// Methods Mol. Biol. -1995. -v.40. -p.343−360.
- Fisher J., Henzinger T.A. Executable cell biology. // Nat. Biotechnol. -2007. -v.25.-N. 11.-p. 1239−1249.
- Fischer U., Huber J., Boelens W.C., Mattaj I.W., Luhrmann R. The HIV-1 Rev activation domain is a nuclear export signal that accesses an export pathway used by specific cellular RNAs. // Cell. -1995. -v.82. -p.47583.
- Fitzgerald M.X., Rojas J.R., Kim J.M., Kohlhaw G.B., Marmorstein R. Structure of a Leu3-DNA complex: recognition of everted CGG half-sites by a Zn2Cys6 binuclear cluster protein./ / Structure. -2006. -v. 14. N.4. -p.725−735.
- Friboulet A., Thomas D. Systems biology an interdisciplinary approach. // Biosens. Bioelectron. -2005. -v.20.-N.12. -p.2404−2407.
- Froimowitz M. HyperChem: a software package for computational chemistry and molecular modeling.// Biotechniques. -1993. -v. 14. —p.1010−1013.
- Fujio K., Evarts R.P., Hu Z., Marsden E.R., Thorgeirsson S.S. Expression of stem cell factor and its receptor, c-kit, during liver regeneration from putative stem cells in adult rat.// Lab. Invest. -1994. -v.70. -p.511−516.
- Fuxreiter M., Tompa P., Simon I. Local structural disorder imparts plasticity on linear motifs.// Bioinformatics. -2007. -v.23. -p.950−956.
- Galbraith S.J., Tran L.M., Liao J.C. Transcriptome network component analysis with limited microarray data.// Bioinformatics. -2006. -v.22. N.15. -p. 1886−1894.
- Ghaemmaghami S., Huh W.-K., Bower K., Howson R.W., Belle A., Dephoure N., O’Shea E.K., Weissman J. S. Global analysis of protein expression in yeast.// Nature. -2003. -v.425. -p.737−741.
- Ghose R., Shektman A., Goger M.J., Ji H., Cowburn D. A novel, specific interaction involving the Csk SH3 domain and its natural ligand.// Nat. Struct. Biol. -2001. v.8. -N.ll. -p.998−1004.
- Giancotti F.G., Tarone G. Positional control of cell fate through joint integrin/receptor protein kinase signaling.// Annu. Rev. Cell. Dev. Biol. -2003. -v. 19.-p. 173−206.
- Gibbs E.M., Zelinski R., Boyde C., Dugaiczyk A. Structure, polymorphism and novel repeated DNA elements revealed by complete sequence of the human alpha-fetoprotein gene.// Biochemistry. -1987. -v.26. -p. 1332−1343.
- Gibbs P. E.M., Witke W. F., Dugaiczyk A. J. The molecular clock runs at different rates among closely related members of a gene family.// Mol. Evol. -1998. -v.46. -p.552−561.
- Gilbert D., Fuss H., Gu X., Orton R., Robinson S., Vyshemirsky V., Kurth M.J., Downes C.S., Dubitzky W. Computational methodologies for modelling, analysis and simulation of signalling networks. // Brief Bioinform. -2006. -v.7. -p.339−353.
- Ginalski K. Comparative modeling for protein structure prediction. // Curr. Opin. Struct. Biol. -2006. -V.16. -p. 172−177.
- Gitig D.M., Koff A. Cdk pathway: cyclin-dependent kinases and cyclin-dependent kinase inhibitors.// Mol Biotechnol. -2001. -v. 19. -p. 179−188.
- Gitlin D., Boesman M. Sites of serum alpha-fetoprotein synthesis in the human and in the rat. // J. Clin Invest. -1967. -v.46. -N.6. -p.1010−1016.
- Gleizes, P-E., Munger, J.S., Nunez, I., Harpel, J.G., Mazzieri R., Noguera, I., Rifkin, D.B. TGF-beta latency: biological significance and mechanisms of activation. //Stem Cells. 1997. — v. 15. — p. 190−197.
- Glotzer M., Murray A.W. and Kirschner M.W. Cyclin is degraded by the ubiquitin pathway.// Nature. -1991. -v.349. -p.132−138.
- Goetze J.P., Hunter I., Lippert S.K., Bardram L., Rehfeld J.F. Processing-independent analysis of peptide hormones and prohormones in plasma.// Front Biosci. -2012. -v. 17. -p. 1804−1815.
- Goh K.I., Cusick M.E., Valle D., Childs B., Vidal M., Barabasi A.L. The human disease network.// Proc. Natl.Acad. Sci. USA. -2007. -v.104. N.21-p.8685−8690.
- Gohlke H., Kiel C., Case D.A. Insights into protein-protein binding by binding free energy calculation and free energy decomposition for the Ras-Raf and Ras-RalGDS complexes.// J. Mol. Biol. -2003. -v.330. N.4. -p.891−913.
- Gomaa A.I., Khan S.A., Leen E.L.S. Diagnosis of hepatocellular carcinoma.// World J. Gastroenterol. -2009. -v.15. -N.l 1. -p.1301−1314.
- Gonnet G.H., Kohen M.A., Benner S.A. Exhaustive matching of the entire protein sequence data base. // Science. 1992. -v. 256. — p. 1443−1445.
- Gonzalez S.A., Keffe E.B. Diagnosis of hepatocellular carcinoma: role of tumor markers and liver biopsy.// Clin. Liver Disease. -2011. -v. 15. N.2. -p.297−310.
- Gowariker V. R., Viswanathan N. V., and Shreedhar J. Polymer Science, New Age International Ltd., New Dehli. -1986.
- Ghuman J., Zunszain P.A., Petitpas I., Bhattacharya A.A., Otagiri M., Curry S. Structural basis of the drug-binding specificity of human serum albumin.// J. Mol. Biol. -2005. -v.353. -p.38−52.
- Gumbiner B.M. Cell adhesion: the molecular basis for tissue architechture and morphogenesis.// Cell. -1996. -v.84. -p.345−357.
- Gunbin K.V., Suslov V.V., Kolchanov N.A. Molecular-genetic systems of development: functional dynamics and molecular evolution.// Biochemistry (Moscow). -2008. —v.73. — N.2. -p.219−230.
- Guo S., Shi X., Yang F., Chen L., Meehan E.J., Bian C., Huang M. Structural basis of transport of lysophospholipids by human serum albumin.// Biochem. J. -2009. -v.423. -p.23−30.
- Ha C. T., Waterhouse R., Wessells J., Wu J. A., Dveksler G. S. Binding of pregnancy-specific glycoprotein 17 to CD9 on macrophages induces secretion of IL-10, IL-6, PGE2, and TGF-betal.// J. Leukoc. Biol. -2005. -v.77. -p.948−957.
- Haddow J.E., Macri J.N., Munson M. The amnion regulates movement of fetally derived alpha-fetoprotein into maternal blood.// J. Lab. Clin. Med. -1979. -v.94. -p.344−347.
- Hamdi H., Nishio H., Zielinski R. Dugaiczyk, A. Origin and phylogenetic distribution of Alu DNA repeats: Irreversible events in the evolution of primates.// J. Mol. Biol. -1999. -v.289. -p.861−871.
- Han E., Phan D., Lo P., Poy M. N., Behringer R., Najjar S. M. and Lin S. H. Differences in tissue-specific and embryonic expression of mouse Ceacaml and Ceacam2 genes.// Biochem. J. -2001. -v.355. -p.417−423.
- Han K., Park B., Kim H., Hong J., Park J. HPID: the Human Protein Interaction Database.// Bioinformatics. 2004. -v.20. — N.15. -p.2466−2470.
- Haourigui M., Thobie N., Martin M-E., Benassayag C., Nunez E.A. In vivo transient rise in plasma free acids alters the functional properties of alpha-fetoprotein. //Biochim. Biophys. Acta. -1992. -v.1125. -p.157−165.
- Harper M.E., Dugaiczyk A. Linkage of the evolutionary related serum albumin and alpha-fetoprotein genes within ql 1−22 of human chromosome 4.// Amer. J. Hum. Gen. -1983. -v.35. -p.565−572.
- Harris S. J., Anthony F. W., Jones D. B., Masson G. M. Pregnancy-specific beta 1-glycoprotein: effect on lymphocyte proliferation in vitro.// J. Reprod. Immunol. -1984. -v.6. -p.267−270.
- Hart G.T., Lee I., Marcotte E.R. A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.// BMC Bioinformatics. -2007. -v.8. -p.236.
- Harter C., Wieland F.T. A single binding site for dilysine retrieval motifs and p23 within the gamma subunit of coatomer.// Proc. Natl. Acad. Sci. USA. -2004. -v.95. N.20. -p. 11 649−11 654.
- Hay R.T. Role of ubiquitin-like proteins in transcriptional regulation. Ernst Schering Res. Found. Workshop. -2006. -p.173−192.
- He X-M., Carter D. Atomic structure and chemistry of human serum albumin. //Nature. -1992. -v.358. -p.209−215.
- Hehlgans S., Haase M., Cordes N. Signalling via integrins: implication for cell survival and anticancer strategies.// Biochim. Biophys. Acta. -2007. -v.1775. -N.l. -p.63−80.
- Hein K.L., Kragh-Hansen U., Morth J.P., Jeppesen M.D., Otzen D., Moller J.V., Nissen P. Crystallographic analysis reveals a unique lidocaine binding site on human serum albumin.// J. Struct. Biol. -2010. -v. 171. N.3. -p.353−360.
- Heiser M., Hutter-Paier B., Jercovic L., Pfranger R., Windisch M., Becker-Angre M., Dieplinger H. J. Vitamin E binding protein afamin protects neuronal cells in vitro.//Neural Transm. Suppl. -2002. -v.62. -p.337−345.
- Hengst L., Reed S.I. Translational control of p27Kipl accumulation during the cell cycle. // Science. -1996. -v.271. -p.l861−1864.
- Henikoff S., Henikoff J.G. Amino acid substitution matrices from protein blocks. // Proc. Nat. Acad. Sci. USA. 1992. — v.89. — p. 10 915−10 919.
- Henon M., Heiles C. The applicability of the third integral of motion: some numerical experiments// Astron. J. 1964. — v.69. -N.l. — p. 73−79.
- Hernandez P., Huerta-Cepas J., Montaner D., Al-Shahrour F., Vails J., Gomez L., Capella G., Dopazo J., Pujana M.A. Evidence for systems-level molecular mechanisms of tumorigenesis.// BMC Genomics. -2007. -v.8. -p.185.
- Herve F., Grigorova A.M., Rajkowski K., Cittanova N. Differences in the binding of thyroid hormones and indoles by rat alpha 1-fetoprotein and serum albumin.// Eur. J. Biochem. 1982. -v. 122. — N.3. -p.609−612.
- Hinchliffe A. Modelling Molecular Structures (2nd ed.). England: John Wiley and Sons Ltd. -2000. -186p.
- Hirano K., Watanabe Y., Adachi T., Ito Y., Sugyura M. Drug-binding properties of human alpha-fetoprotein.// Biochem. J. -1985. -v.231. N.l. -p.189−191.
- Hong, M.L., Jiang, N., Gopinath, S., Chew, F.T. Proteomics technology and therapeutics.//Clin. Exp. Pharmacol. Physiol. -2006. -v.33. -p.563−568.
- Hoops S., Sahle S., Gauges R., Lee C., Pahle J., Simus N., Singhal M., Xu L., Mendes P., Kummer U. COPASI~a COmplex PAthway Simulator.// Bioinformatics. -2006. -v.22. -p.3067−3074.
- Hou T., Chen K., McLaughlin W.A., Lu B., Wang W. Computational analysis and prediction of the binding motif and protein interacting partners of the Abl SH3 domain.//PLoS Comput. Biol. -2006. -v.2. -N.l. -el.
- Hsia J.C., Er J.S., Tan C.T., Ester T. Ruoslahti E. a-Fetoprotein binding specificity for arachidonate, bilirubin, docosahexaenoate and palmitate.// J. Biol. Chem. -1980. -v.255. -p.4224−4227.
- Humphrey W., Dalke A., A. and Schulten K. VMD Visual Molecular Dynamics.// J. Molec. Graphics. -1996. -v. 14. -p.33−38.
- Hunt T. Protein sequence motifs involved in recognition and targeting: a new series.// Trends in Biochem.Sci. -1990. -v.15. -p.305.
- Hutchings H., Ortega N., Plouet J. Extracellular matrix-bound vascular endothelial growth factor promotes endothelial cell adhesion, migration, and survival through integrin ligation.// FASEB J. -2003. -v. 17. N.ll. -p. 15 201 522.
- Ideker T., Galitski T., Hood L. A new approach to decoding life: systems biology.// Annu. Rev. Genomics Hum. Genet. -2001. -v.2. -p.343−372.
- Iida H., Honda M., Kawai H.F., Yamashita T., Shirota Y., Wang B.C., Miao H., Kaneko S. Ephrin-Al expression contributes to the malignant characteristics of {alpha}-fetoprotein producing hepatocellular carcinoma. // Gut. -2005. -v.54. -N.6. -p.843−851.
- Ijichi M., Takayama T., Matsumura M., Shiratori Y., Omata M., Makuuchi M. alpha-Fetoprotein mRNA in the circulation as a predictor of postsurgicalrecurrence of hepatocellular carcinoma: a prospective study. 11 Hepatology. -2002. -v.35. -p.853−860.
- Inagaki F. Three-Dimensional Structures of Proteins Determined by Two-Dimensional NMR. // Cell Struct. Funct. 1990. — v. 15. — p.237−243.
- Ingram R.S., Scott R.W., Tilghman. S. M. a-Fetoprotein and albumin genes are in tandem in the mouse genome. // Proc. Natl. Acad. Sci. USA. -1981. -v.78. -p.4694−4698.
- Ingvarsson B.I., Carlsson R.N. Binding of fatty acids and tryptophan to alpha-fetoprotein from fetal pigs. // Biochim. Biophys. Acta. -1978. -v.537. -N.2. -p.507−509.
- Isonishi S., Ogura A., Kiyokawa T., Suzuki M., Kunito S., Hirama M., Tachibana T., Ochiai K., Tanaka T. Alpha-fetoprotein (AFP)-producing ovarian tumor in an elderly woman. // Int. J. Clin. Oncol. -2009. -v. 14. -N.l. -p.70−73.
- Iturralde M., Alava M.A., Gonzalez B., Anel A., Pineiro A. Effect of AFP and albumin on the uptake of polyunsaturated fatty acids by rat hepatoma cells and fetal rat hepatocytes.// Biochem. Biophys. Acta. -1991. -v. 1086. -p.81−88.
- Jacobson H.I., Thompson V.D., Janerich D.T. Multiple births and maternal risk of breast cancer.// Amer. J. Epidemiol. -1989. -v. 129. -p.865−873.
- Jacobson H.I., Bennett J.A. Mizejewski G.J. Inhibition of estrogen-dependent breast cancer growth by a reaction product of alpha-fetoprotein and estradiol. // Cancer Res. -1990. -v.50. -p.415−420.
- Janczarek M., Skorupska A. The Rhizobium legumnosarum bv. Trifolii RosR: transcriptional regulator involved in exopolysaccharide production. // Mol. Plant Microbe Interact. -2007. -v.20. -N.7. -p.867−881.
- Javelaud D., Mauviel A. Crosstalk mechanisms between the mitogen-activated protein kinase pathways and Smad signaling downstream of TGF-beta: implications for carcinogenesis. // Oncogene. -2005. -v.24. -p.5742−5750.
- Jenuwein T. and Allis C.D. Translating the histone code. // Science. 2001. -v.293. -p. 1074−1080.
- Jeong H., Tombor B., Albert R., Oltvai Z.N., Barabasi A.L. The large-scale organization of metabolic networks.// Nature. -2000. -v.407. -N.6804. -p.651−654.
- Jiang T., Keating A.E. AVID: an integrative framework for discovering functional relationships among proteins. // BMC Bioinformatics. -2005. -v.6. -p.136.
- Jones D.T., Taylor W.R., Thornton J.M. The rapid generation of mutation data matrices from protein sequences. // CABIOS. 1992. — v. 8. — p. 275−282.
- Jones E.A., Clement-Jones M., James O.F., Wilson D. I. Differences between human and mouse alpha-fetoprotein expression during early development. // J. Anat. -2001. -v.198. -p.555−559.
- Jones S., Thornton J. M. Searching for functional sites in protein structures. // Curr. Opin. Chem. Biol. -2004. -v.8. -p.3−7.
- Jonsson P.F., Bates P.A. Global topological features of cancer proteins in the human interactome. // Bioinformatics. -2006. -v.22. -N.18. -p.2291−2297.
- Jonsson P., Cavanna T., Zicha D., Bates P. Cluster analysis of networks generated through homology: automatic identification of important protein communities involved in cancer metastasis.// BMC Bioinformatics. -2006. -v.7. -p.2.
- Kang G., Matsuura E., Sakamoto T., Sakai M., Nishi B. Analysis of epitopes of mouse monoclonal antibodies against human alpha-fetoprotein.// Tumor Biol. -2001. -v.22. -N.4. -p.254−261.
- Karamova E.R., Yazova A.R., Goussev A.I., Yakimenko E.F., Abelev G.I. Conformational variants of human alpha-fetoprotein.// Tumor Biol. -1998. -v.19. -p.310−317.
- Karamova E.R., Yazova A.K., Yakimenko E.F., Goussev A.I., Abelev G.I. New approaches for detection and characterization of alpha-fetoprotein epitope variants. // Tumor Biol. -2003. -v. 124. -p. 1−8.
- Kaczanowski S., Zielenkiewicz P. Why similar protein sequences encode similar three-dimensional structures? // Theor. Chem. Account. -2010. -v. 125. -p.543−550.
- Kauffman, L., Rousseeuw, P.J. Finding groups in data: an introduction to cluster analysis. Wiley series in probability and statistics. John Wiley and Sons New-York. -1990.
- Kawamura S, Ohkuma M, Chijiiwa Y, Kohno D, Nakagawa H, Hirakawa H, Kuhara S, Torikata T. Role of disulfide bonds in goose-type lysozyme. // FEBS J. 2008. — v. 275. — N. 11. — p. 2818−2830.
- Kay B.K., Williamson M.P., Sudol M. The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains.// FASEB J. -2000. -v. 14. -p.231−241.
- Kazimirski A.N., Salmasi J.M., Terentiev A.A., Bespalova Z.D., Kudrjavceva E.V., Poriadin G.V., Tatarinov Y.S. Biological effects of fragment LDSYQCT of sequence human AFP (13−19).// Tumor Biol. -2000. -v.21. -Suppl.l. -p.37.
- Keel B.A., Eddy K.B., Cho S., May J.V. Human alpha-fetoprotein purified from amniotic fluid enhances growth factor-mediated cell proliferation in vitro.// Mol. Reprod. Dev. -1991. -v.30. -N.2. -p.l 12−118.
- Keel B.A., Eddy K.B., Cho S., Gangrade B.K., May J.V. Purified human alpha-fetoprotein inhibits growth factor-stimulated estradiol production by porcine granulosa cells in monolayer culture.// Endocrinology. -1992. -v. 130. -N.6. -p.3715−3717.
- Kerscher O. SUMO junction-what's your function? New insights through SUMO-interacting motifs. // EMBO Rep. -2007. -v.8. -p.550−555.
- Kitano T., Liu Y-H., Ueda S., Saitou N. Human specific amino acid changes found in 103 protein coding genes.// Mol. Biol. Evol. -2004. -v.21. -N.5. -p.936−944.
- Koide N., Nishio A., Igarashi J., Kajikawa S., Adachi N., Amano J. Alpha-fetoprotein-producing gastric cancer: histochemical analysis of cell proliferation, apoptosis and angiogenesis.//Am. J. Gastroenterol. -1999. -v.94. -p. 165 8−1663.
- Kudo M. Hepatocellular carcinoma 2009 and beyond: from the surveillance to molecular targeted therapy.// Oncology. -2008. -v.75. Suppl.l. -p.1−12.
- Kumar S. A stepwise algorithm for finding minimum evolution trees. // Mol. Biol. Evol. 1996. — v.13. — p. 584−593.
- Kyte J., Doolittle R.F. A simple method for displaying the hydrophobic character of a protein.// J. Mol. Biol. -1982. -v.157. -p.105−132.
- Laderoute M.P., Pilarski L.M. Inhibition of apoptosis by alpha-fetoprotein (AFP) and role of AFP receptors in anti-cellular senescence.// Anticancer Res. -1994. -v.14. -N.6. —p.2429−2438.
- Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. PROCHECK: a program to check the stereochemical quality of protein structures.// J. Appl. Cryst. -1993. -v.26. -p.283−291.
- Lau S., Laussac J.-P., Sarkar B. Synthesis and copper (Il)-binding properties of the N-terminal peptide of human a-fetoprotein. // Biochem J. 1989. -v.257. -p.745−750.
- Leal J.A., Gangrade B.K., Kiser J.L., May J.V., Keel B.A. Human mammary tumor cell proliferation: primary role of platelet-derived growth factor and possible synergism with human alpha-fetoprotein.// Steroids. -1991. -v.56. -N.5. -p.247−251.
- Lee K. C., Crowe A.J., Barton M.C. p53-mediated repression of alpha-fetoprotein gene expression by specific DNA binding. // Mol.Cell.Biol. -1999. -v.19. -p.1279−1288.
- Lee, H., Deng, H., Sun, F., Chen, T. An integrated approach to the prediction of domain-domain interactions.// BMC Bioinformatics-2006. —v.7. — p.269.
- Lee S., Tsai Y.C., Mattera R., Smith W.J., Kostelansky M.S., Weisman A.M., Bonifacino J.S., Hurley J.H. Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.// Nat. Struct. Mol. Biol. -2006. -v. 13. N.3. -p.264−271.
- Leffert H.I., Sell S. Alpha-fetoprotein biosynthesis during the growth cycle of differentiated fetal rat hepatocytes to primary monolayer culture. // J. Cell Biol. -1974. -v.61. -p.823−829.
- Lehmann M.G., Lehmann D., Martini G.A. Alpha-1-foetoprotein. Isolation and crystalization from human plasma.// Clin. Chim. Acta. -1971. -v.33. N.l. -p. 197−206.
- Lehmann M.G., Lehmann D. Alpha-l-foetoprotein: II. Isolation and crystalization from a primary liver cell carcinoma.// Z. Klin. Chem. Klin. Biochem. -1971. -v.9. -N.4. -p.309−313.
- Lejon S., Cramera J.F., Nordberg P. Structural basis for the binding of naproxen to human serum albumin in the presence of fatty acids and the GA module.// Acta Cryst. -2008. F64. -p.64−69.
- Lemak A.S., Balabaev N.K. A comparison between collisional dynamics and Brownian dynamics.// Mol. Simul. -1995. -v.15. -p.223−231.
- Lemak A.S., Balabaev N.K. Molecular dynalics simulation of a polymer chain in solution by collisional dynamics method.// J. Comput. Chem. -1996. -v. 17.-p. 1685−1695.
- Lemmon M.A., Ladbury J.E., Zhou M., Pinchasi D., Lax I., Engelman D.M., Schlessinger J. Two EGF molecules contribute additively to stabilization of the EGFR dimer.// EMBO J. -1997. -v. 16. -p.281−294.
- Leong S.S.J., Middelberg A.P.J. The refolding of different a-fetoprotein variants.// Protein Sci. -2006. -v. 15. -p.2040−2050.
- Letourneur F., Gaynor E.C., Hennecke S., Demolliere C., Duden R., Emr S.D., Riezman H., Cosson P. Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum.// Cell. -1994. -v.19. -N.7. -p. 1199−1207.
- Lexa K.W., Alser K.A., Salisburg A.M. The search for low energy conformational families of small peptides: Searching for active conformations of small peptides in the absence of a known receptor.// Int. J. Quantum Chem. -2007. -v.107. -p.3001−3012.
- Li H., Ilin S., Wang W., Duncan E.M., Wysocka D., Allis C.D., Patel D.J. Molecular basis for site-specific read-out of histone H3K4me3 by the BPTF PHD finger of NURF.// Nature. -2006. -v.442. -p.91−95.
- Li M.S., Li P.F., Yang F.Y., He S.P., Du G.G., Li G. The intracellular mechanism of AFP promoting the proliferation of NIH 393 cells.// Cell Res. -2002. -v.12. -p.151−156.
- Li, M.S., Li, P.F., Du, G.G., Li, G. The enhancement of proliferation of HeLa cells by the alpha-fetoprotein.// Clin. J. Biochem. Mol. Biol. -2002. -v.18. -p.750−754.
- Li M.S., Li P.F., Chen Q., Du G.G., Li G. Alpha-fetoprotein stimulated the expression of some oncogenes in human hepatocellular carcinoma Bel 7402 cells.// World J. Gastroenterol. -2004. -v. 10. -p.819−824.
- Li M.S., Liu X.H., Zhou S., Li P.F., Li G. Effects of alpha fetoprotein on escape of Bel 7402 cells from attack of lymphocytes.// BMC Cancer. -2005. -v.5. -p.96.
- Li M.S., Zhou S., Liu X.H., Li P.F., McNutt M.A., Li G. Alpha-fetoprotein shields hepatocellular carcinoma cells from apoptosis induced by tumor necrosis factor-related apoptosis-inducing ligand.// Cancer Lett. 2007. -v.249. -p.227−234.
- Li Z., Shaw S.M., Yedabnick M.J., Chan C. Using a state-space model with hidden variables to infer transcription activities.// Bioinformatics-2006. -v.22. -N.6. -p.747−754.
- Libbrecht L., Severi T., Cassiman D. et al. Glypican-3 expression distinguishes small hepatocellular carcinomas from cirrhosis, dysplastic nodules, and focal nodular hyperplasia-like nodules.// Am. J. Surg. Pathol. -2006. -v.30. -p.1405−1411.
- Lin T. M., Halbert S. P., Spellacy W. N. Measurement of pregnancy-associated plasma proteins during human gestation.// J. Clin. Invest. -1974. -v.54. -p.576−5 82.
- Lipman D.J., Pearson W.R. Rapid and sensitive protein similarity searches.// Science. -1985. -v.227. -N.4693. -p.1435−1441.
- Liu E.T. Systems biology, integrative biology, predictive biology.// Cell. -2005. -v.121. -N.4. -p.505−506.
- Liu H.L., Hsu J.P. Recent developments in structural proteomics for protein structure determination.// Proteomics. -2005. -v.5. -p.2056−2068.
- Liu Y., Daley S., Evdokimova V.N., Zdobinski D.D., Potter D.M., Butterfield L.H. Hierarchy of alpha fetoprotein (AFP)-specific T cell responses in subjects with AFP-positive hepatocellular cancer.// J. Immunol. -2006. -v. 177.-p.712−721.
- Lobachev K.S., Rattray A., Narayanan V. Hairpin- and cruciform-mediated chromosome breakage: causes and consequences in eukaryotic cells.// Front Biosci. -2007. —v. 1. -N.12. -p.4208^1220.
- Loscalzo J., Kohane I., Barabasi A-L. Human disease classification in the postgenomic era: A complex systems approach to human pathobiology.// Mol. Syst. Biol. -2007. -v.124.
- Lu C.Y., Changelian P. S. Unanue E.R. Alpha-fetoprotein inhibits macrophage expression of la antigens.// J. Immunol. -1984. —v.132. -p. 1722— 1727.
- Luft A.J., and Lorscheider F.L. Structural analysis of human and bovine a-fetoprotein by electron microscopy, image processing and circular dichroism.// Biochemistry-1983. -v.22. -p.5971−5978.
- Luo F., Yang Y., Chen C.F., Chang R., Zhou J., Scheuermann R.H. Modular organization of protein interaction networks. // Bioinformatics. —2007. -v.23. -N.2. -p.207−214.
- Maiorov V.N., Crippen G.M. Significance of root-mean-square deviation in comparing three-dimensional structures of globular proteins.// J. Mol. Biol. -1994. -v.235. -p.625−634.
- Majewski J., Ott J. Amino acid substitutions in the human genome: evolutionary implications of single nucleotide polymorphisms.// Gene. -2003. -v.305. -N.2. -p.167−173.
- Malaguarnera J., Geordano M., Paladino I. et al. Serum markers of hepatocellular carcinoma.// Digest. Diseases Sei. —2010. -v.55. -N.10. -p.2744−2755.
- Martin A. P., Palumbi S.R. Body size, metabolic rate, generation time, and the molecular clock.// Proc. Natl. Acad. Sci. USA. -1993. -v.90. -p.4087−4091.
- Maslov S., Sneppen K. Specificity and stability in topology of protein networks.// Science. -2002. -v.296. -N.5569. -p.910−913.
- Massague, J., Seoane, J., Wotton, D. Smad transcription factors. //Genes Dev. 2005. — v.19. — N23. — p. 2783−2810.
- Mayer B.J. Protein-protein interactions in signaling cascades.// Mol. Biotechnol. -1999. -v. 13. -p.201−213.
- McLellan A. S., Fischer B., Dveksler G., Hori T., Wynne F., Ball M., Okumura K., Moore T. and Zimmermann W. Structure and evolution of the mouse pregnancy-specific glycoprotein (PSG) gene locus.// BMC Genomics. -2005. —v.6. -p.4.
- Mesfin F.B., Bennett G.A., Jacobson H.I., Zhu S., Andersen T.T. Alpha-fetoprotein-derived antiestrotrophic octapeptide. Biochim. Biophys. Acta. -2000. -v.1501. -N.l. -p.33−43.
- Mesfin F.B., Andersen T.T., Jacobson H.I., Zhu S., Bennett G.A. Development of a synthetic cyclized peptide derived from alpha-fetoprotein that prevents the growth of human breast cancer. // J. Peptide Res. -2001. -v.58. -p.246−256.
- Metcalf V., Brennan S., George P. Using serum albumin to infer vertebrate phylogenies. //Applied Bioinformatics. -2003. -v.2. -3 Suppl. -S97-S107.
- Michael S., Trave G., Ramu C., Chica C., Gibson T.J. Discovery of candidate KEN-box motifs using cell cycle keyword enrichment combined with native disorder prediction and motif conservation. // Bioinformatics. -2008. -v.24. -p.453−457.
- Mika S., Rost B. Protein-protein interactions more conserved within species than across species. // PLoS Comput. Biol. -2006. -v.2. -N.7. -e79.
- Milligan S.R., Khan O., Nash M. Competitive binding of xenobiotic oestrogens to rat alpha-fetoprotein and sex steroid binding proteins in human and rainbow trout (Oncorhynchus mykiss) plasma. // J. Comp. Endocrinol. -1998. -v.112. -N.l. -p.89−95.
- Milo R. Dynamic proteomics in mammalian cells: capabilities and challenges. // Mol. Biosyst. 2007. -v.3. -p.542−546.
- Minghetti P.P., Law S. W., Dugaiczyk A. The rate of molecular evolution of a-fetoprotein approaches that of pseudogenes. // Mol. Biol. Evol. -1985. -v.2. -N.4. -p.347−358.
- Mishra P.K., Baum M., Carbon J. Centromere size and position in Candida albicans are evolutionary conserved independent of DNA sequence heterogeneity. // Mol. Genet. Genomics. -2007. -v.278. -N.4. p. 45565.
- Mizejewski G.J., Vonnegut M., Jacobson H.I. Estradiol-activated alpha-fetoprotein suppresses the uteroptropic response to estrogens. // Proc. Natl. Acad. Sci. -1983. -v.80. -p.2733−2737.
- Mizejewski G.J. An apparent dimerization motif in the third domain of alpha-fetoprotein: molecular mimicry of the steroid/thyroid receptor superfamily. // Bioessays. -1993. -v. 15. -p.427−432.
- Mizejewski G.J. The phylogeny of alpha-fetoprotein in vertebrates: Survey of biochemical and physiological data. // Crit. Rev. Eucaryot. Gene Expr. -1995a.-v.5.-p.281−316.
- Mizejewski G.J. Alpha-fetoprotein signal sequences: a proposed mechanism for subcellular localization and organelle targeting. // J. Theor. Biol. -1995b. -v. 176.-p. 103−113.
- Mizejewski G.J., Dias J.A., Hauer C.R., Henrikson K.P., Gierthy I. Alpha-fetoprotein derived synthetic peptides: assay from an estrogen-modifying regulatory segment. // Mol. Cell. Endocrinol. -1996. -v.118. -p.15−33.
- Mizejewski G.J. Alpha-fetoprotein as a biologic response modifier: relevance to domain and subdomain structure. // Proc. Soc. Exp. Biol. Med. -1997. -v.215. -p.333−362.
- Mizejewski G.J. Alpha-fetoprotein structure and function: relevance to isoforms, epitopes and conformational variants. // Exp. Biol. Med. -2001. -v.226. -p.377−408.
- Mizejewski G.J. Biological role of alpha-fetoprotein in cancer: prospects for anticancer therapy. // Expert Rev. Anticancer Ther. 2002. -v.2. -N.6. -p.709−735.
- Mizejewski G.J., MacColl R. Alpha-fetoprotein growth inhibitory peptides: potential leads for cancer therapeutics. // Mol. Cancer Ther. -2003. -v.2. -N.l 1. -p. 1243−1255.
- Mizejewski G.J. Biological roles of alpha-fetoprotein during pregnancy and prenatal development. // Exp. Biol. Med. -2004. -v.229. -p.439−463.
- Mizejewski G.J. Alpha-fetoprotein (AFP)-derived peptides as epitopes for hepatoma immunotherapy: a commentary. // Cancer Immunol. Immunother. -2009. -v.58. -p.159−170.
- Mizejewski G.J. Mapping of structure-function peptide sites on the human alpha-fetoprotein amino acid sequence. //Atlas Genet. Cytogenet. Oncol. Hematol. -2010a. v.2. — p. 331−382.
- Mizejewski, G.J. Review of the putative cell-surface receptors for alpha-fetoprotein: identification of a candidate receptor protein family. // Tumor Biol. 2011. -v.32. -N.2. — p. 241−258.
- Morimoto O., Nagano H., Miyamoto. A, Fujiwara Y., Kondo M., Yamamoto T. Association between recurrence of hepatocellular carcinoma and alpha-fetoprotein messenger RNA levels in peripheral blood. // Surg. Today. -2005. -v.35. -p.1033−1041.
- Morinaga T., Sakai M., Wegmann T.G., Tamaoki T. Primary structure of human alpha-fetoprotein and its mRNA. // Proc. Natl. Acad. Sci. USA. -1983. -v.80. -p.4604−4608.
- Moriyama M., Durham A.-D., Moriyama H., Hasigawa K., Nishikawa S.-I., Radtke F., Osawa M. Multiple roles of Notch signaling in the regulation of the epidermal development. // Develop. Cell. 2008. — v.14. — p. 59−604.
- Moro L., Venturino M., Bozzo C., Silengo L., Altruda F., Beguinot L., Tarone G., Defilippi P. Integrins induce activation of EGF receptor: role of MAP kinase induction and adhesion-dependent cell survival.// EMBO J. -1998. -v.17. -p.6622−6632.
- Moro R., Tamaoki T., Wegmann T.J., Longnecker B.M., Laderoute M.P. Monoclonal antibodies directed against a widespread oncofetal antigen. The alpha-fetoprotein receptor. // Tumor Biol. -1993. -v.14. -p.l 16−130.
- Morris A.L., MacArthur M.W., Hutchinson E.G., Thornton J.M. Stereochemical quality of proteins structure coordinates.// Proteins. -1992. -v.12. -p.345−364.
- Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function.// J. Comput. Chem. -1998. -v.l9.p. 1639−1662.
- Moustakas, A., Heldin, C-H. Non-Smad TGF-beta signals. // J. Cell Sci. -2005.-v. 118.-p. 3573−3584.
- Muller S., Matunis M.J., Dejean A. Conjugation with the ubiquitin-related modifier SUMO-1 regulates the partitioning of PML within the nucleus.// EMBO J. -1998. -v.17. -p.61−70.
- Mulliken R.S. Electronic population analysis on LCAO-MO molecular wave functions.// J. Chem. Phys. -1995.v.23.p.l833−1831.
- Muralt G., Roulet D.L.A. Etude immunologique des proteins seriques foetalis humanes.// Helv. Paediatr. Acta. -1961. -v. 16. -p.517−520.
- Nagai M., Becker J.D., Deutsch H.F. The fatty acid levels in rat alpha-fetoprotein derived from fetuses, pragnancy and hepatoma sera.// Oncodev. Biol. Med. -1982. -v.3. -p.343−350.
- Nagata K. Studies of the structure-activity relationships of peptides and proteins involved in growth and development based on their three-dimentional structures. // Biosci. Biotechnol. Biochem. 2010. — v. 74. — N3. — p.462170.
- Nakata K., Muro T., Furukawa R., Kono K., Kusumoto Y., Ishii N., Munehisa T., Koji T., Nagataki S. Presence of immunoglobulin G in human sera binding to alpha-fetoprotein.// Oncodev. Biol. Med. -1983. -v.4. -N.6. -p.101−104.
- Narizhneva N.V., Uversky V.N. Decrease of dielectric constant transforms the protein molecule into the molten globule state.// Biochemistry (Mosc.). -1998. -v.64. -N.4. -p.448155.
- Naval J., Villacampa M.J., Goguel A.F., Uriel J. Cell type-specific receptors for AFP in a mouse T-lymphoma cell line.// Proc. Natl. Acad. Sei. USA. -1985. -v.82. -p.3301−3304.
- Neduva V., Russel R.B. Linear motifs: evolutionary interaction switches.// FEBS Lett. -2005. -v.579. -N.15. -p.3342−3345.
- Nekrasov A.N. Entropy of protein sequences: an integral approach.// J. Biomol. Struct. Dyn. -2002. -v.20. -N.l. -p.87−92.
- Nekrasov A.N. Analysis of the information structure of protein sequences: a new method for analyzing the domain organization of proteins.// J. Biomol. Struct. Dyn. -2004. -v.21. -N.5. -p.615−623.
- Nekrasov A.N., Zinchenko A.A. Structural features of the interfaces in enzyme-inhibitor complexes.// J. Biomol. Struct. Dyn. -2010. -v.28. -N.l. -p.85−96.
- Newby D., Dalgliesh G., Lyall F. et al. Alphafetoprotein and alphafetoprotein receptor expression in the normal human placenta at term.// Placenta. -2005. -v.26. -p. 190−200.
- Newman M.E.F. The structure and function of complex networks.// SLAM Review. -2003. -v.45. -N.2. -p.167−256.
- Nguyen H., Gitig D.M., Koff A. Cell-free degradation of p27 Kipl a Gl cyclin-dependent kinase inhibitor, is dependent on CDK2 activity and the proteosome.// Mol. Cell. Biol. -1999. -v. 19. -N.2. -p. 1190−1201.
- Nickeil S., Beck F., Korinek A., Mihalache O., Baumeister W., Plitzko J.M. A visual approach to proteomics.// Nat. Rev. Mol. Cell Biol. -2006. -v.7. -p.225−230.
- Nickolson J.K., London J.C. Systems biology. Metabolomics.// Nature. -2008. -v.455. -N.7216. -p.1054−1056.
- Nishi S., Matsue H., Yoshida H., Yamamoto R. Sakai M. Localization of estrogen-binding site of alpha-fetoprotein in chimeric human-rat proteins.// Proc. Natl. Acad. Sci. USA. 1991. -v.88. -p.3102−3105.
- Nishihira J., Koyama Y., Sakai M., Nishi S. The fatty acid binding site of human alpha-fetoprotein.// Biochem. Biophys. Res. Commun. -1993. -v. 196. -p.1049−1057.
- Nishio H., Dugaiczyk A. Complete structure of the human alpha-albumin gene, a new member of the serum albumin multigene family.// Proc. Natl. Acad. Sci. USA. -1996. -v.93. -p.7557−7561.
- Nishio H., Hamdi H., Dugaiczyk A. Genomic expansion across the albumin gene family on human chromosome 4q is directional.// J. Biol. Chem. -1999. -v.380. -p.1431−1434.
- Normanno N., Bianco C., De Luca A., Maiello M.R., Salomon D.S. Target-based agents against ErbB receptors and their ligands: a novel approach to cancer treatment.// Endocr. Rel. Cancer. -2003. -v. 10. -p. 1−21.
- Oh S.Y., Shin J.H., Roe J.H. Dual Role of OhrO as a Repressor and an Activator in Response to Organic Hydroperoixides in Streptomyces coelicolor.// J. Bacteriol. -2007. -v. 189. -N17. -p.6284−6292.
- Okumoto K., Hattori E., Tamura K., Kiso S., Watanabe H., Saito K. et al. Possible contribution of circulating transforming growth factor-betal to immunity and prognosis in unresectable hepatocellular carcinoma.// Liver Int. -2004.-v.24.-p.21−28.
- Olayioye M.A., Neve R.M., Lane H.A., Hynes N.E. The ErbB signaling network: receptor heterodimerization in development and cancer.// EMBO J. -2000.-v. 19.-p.3159−3167.
- Omori M., Evarts R.P., Omori N., Hu Z., Marsden E.R., Thorgeirsson S.S. Expression of alpha-fetoprotein and stem cell factor/c-kit system in bile duct ligated young rats.// Hepatology-1997. -v.25. -p.l 115−1122.
- Otaki J.M., Ienaka S., Gotoh T., Yamamoto H. Availability of short amino acid sequences in proteins.// Protein Sci. -2005. -v.14. -p.617−625.
- Otaki J.M., Gotoh T., Yamamoto H. Potential implications of availability of short amino acid sequences in proteins: an old and new approach to protein decoding and design.// Biotech. Annu. Rev. -2008. -v.14. -p.109−141.
- Otaki J.M., Tsutsumi M., Gotoh Т., Yamamoto H. Secondary structure characterization based on amino acid composition and availability in proteins.// J. Chem. Inf. Model. -2010. -v.50. -p.690−700.
- Otterbein L.R., Cosio C., Graceffa P., Dominguez R. Crystal structures of the vitamin D-binding protein and its complex with actin: structural basis of the actin-scavenger system.// Proc. Natl. Acad. Sci. USA. -2002. -v.99. -p.8003−8008.
- Pal D., Chakrabarti P. Conformational similarity indices between different residues in proteins and alpha-helix propensities.// J. Biomol. Struct. Dynam. -2000. -V.18. -N.2. -p.273−280.
- Pal D., Chakrabarti P. Non-hydrogen bond interactions involving the methionine sulfur atom.// J. Biomol. Struct. Dynam. -2001 v. 19. -N.l. -p.l 15−128.
- Pal D., Chakrabarti P. On residues in the disallowed regions in the Ramachandran map.// Polymers. -2002. -v.63. -N.3. -p. 195−206.
- Pal D., Eisenberg D. Inference of protein function from protein structure.// Structure. -2005. -v.13. -p.121−130.
- Pangbum M. K. Spontaneous thioester bond formation in alpha 2-macroglobulin, C3 and C4.// FEBS Lett. -1992. -v.308. -N.3. -p.280−282.
- Paradis E., Douillard H., Koutroumanis M., Goodver C., LeBlanc A. Amyloid beta peptide of Alzheimer’s disease downregulates Bcl-2 and upregulates bax expression in human neurons. // J. Neurosci. -1996. -v. 16. -N.23. p. 7533−7539.
- Pardee, A.D., Butterfield, L.H. Immunotherapy of hepatocellular carcinoma: Unique challenges and clinical opportunities. // Oncoimmunololy. 2012. -v.l.-p. 48−50.
- Parmelee D.C., Evenson M.A., Deutsch H.F. The presence of fatty acids in human alpha-fetoprotein.// J. Biol. Chem. 1978. -v.253. -p.2114−2119.
- Parrish J.R., Gulyas K.D., Finley R.L., Jr. Yeast two-hybrid contributions to interactome mapping.// Curr. Opin. Biotechnol. -2006. -v. 17. -N.4. -p.3 87−93.
- Pearlman D.A., Case D.A., Caldwell J.W., Seibel G.L., Singh U.C., Weiner P., Kollman P.A. Amber 4.0. University of California, San Francisco. -1991.
- Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison.// Proc. Natl. Acad. Sci. USA. -1988. -v.85. -N.8. -p.2444−2448.
- Pearson W.R. Rapid and sensitive sequence comparison with FASTP and FASTA.// Methods Enzymol. -1990. -v.183. -p.63−98.
- Perrodou E., Chica C., Poch O., Gibson T.J., Thompson J.D. A new protein linear motif benchmark for multiple sequence alignment software.// BMC Bioinformatics. -2008. -v.9. -p.213.
- Peters T., Jr. All About Albumin: Biochemistry, Genetics and Medical Applications, Academic Press, New York. -1995.
- Peters J.M. The anaphase promoting complex/cyclosome: a machine designed to destroy.// Nat. Rev. Mol. Cell Biol. -2006. -v.7. -p.644−656.
- Petitpas I., Gruene T., Bhattacharya A.A., Curry S. Crystal structures of human serum albumin complexed with monounsaturated and polyunsaturated fatty acids.// J. Mol. Biol. -2001. -v.314. -p.955−960.
- Petropoulos C., Andrews G., Tamaoki T., Fausto N. Alpha-fetoprotein and albumin mRNA levels in liver regeneration and carcinogenesis.// J. Biol. Chem. -1983. -v.258. -N.8. -p.4901−4906.
- Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., Ferrin T.E. UCSF Chimera a visualization system for exploratory research and analysis.// J. Comput. Chem. -2005. -v.25. -p.1605−1612.
- Pfleger C.M., Kirschner M.W. The KEN box: an APC recognition signal distinct from the D box targeted by Cdhl.// Genes Dev. -2000. -v.14. -p.655−665.
- Platzer A., Perco P., Lukas A., Mayer B. Characterization of protein-interaction networks in tumors.// BMC Bioinformatics. -2007. -v.8. -p.224.
- Plebani M., D’Amico D.F. Role of blood AFP mRNA and tumor grade in the preoperative prognostic evaluation of patients with hepatocellular carcinoma.// World J. Gastroenterol. -2005. v. l 1. — p. 6920−6925.
- Plevin M.J., Mills M.M., Ikura M. The LxxLL motif: a multifunctional binding sequence in transcriptional regulation.// Trends Biochem. Sci. -2005. -v.30. -N.2. -p.66−69.
- Potapovich A.I., Pastore S., Kostyuk V.A., Lulli D., Mariani V., De Luca C., Dudich E.I., Korkina L.G. a-Fetoprotein as a modulator of the proinflammatory response of human keratinocytes.// Brit. J. Pharmacol. -2009. -v.158. —N.5. -p.1236−1247.
- Priami C., Quaglia P. Modelling the dynamics of biosystems.// Brief. Bioinform. -2004. -v.5. -N.3. -p.259−269.
- Przulj N., Corneil D.G., Jurisica I. Modeling interactome: scale-free or geometric? // Bioinformatics. -2004. -v.20. -N.18. -p.3508−3515.
- Ptitsyn O.B., Uversky V.N. The molten globule is the third thermodynamical state of protein molecules. // FEBS Letts. -1994. -v.341. -N.l. -p. 15−18.
- Ptitsyn O.B. Molten globule and protein folding.// Adv. Protein Chem. -1995. -v.47. -p.83−229.
- Ptitsyn O.B., Bychkova V.E., Uversky V.N. Kinetic and equilibrium folding intermediates.// Philos. Trans. R. Soc. Lond. B. Biol.Sci. -1995. -v.348. -N.l323. -p.3541.
- Ptitsyn O.B., Pain R.H., Semisotsov G.V., Zerovnik E., Razgulyiaev O.I. Evidence for a molten globule state as a general intermediate in protein folding.// FEBS Letts. -1990. -v.261. -N.l. -p.20−24.
- Pucci P., Siliciano R., Malorni A., Marino G., Tecce M.F., Ceccarini C., Terrana B. Human alpha-fetoprotein primary structure: a mass spectrometric study. // Biochemistry. -1991. -v.30. -p.5061−5066.
- Puigserver P., Wu Z., Park C. W., Graves R., Wright M. and Spiegelman B. M. A cold-inducible coactivator of nuclear receptors linked to adaptive thermogenesis.// Cell. -1998. -v.92. -p.829−839.
- Purves L.R., Bersohn I., Geddes E.W. Serum alpha-fetoprotein and primary cancer of the liver in man.// Cancer. -1978. -v.25. -p.1261−1270.
- Rajarathinam T., Lin Y.H. Topological properties of protein-protein and metabolic interaction networks of Drosophila melanogaster.// Genomics Proteomics Bioinformatics. -2006. -v.4. -N.2. -p.80−89.
- Ramachandran G.N., Ramakrishnan C., and Sasisekharan V. Stereochemistry of polypeptide chain configurations.// J. Mol. Biol. -1963. -v.7. -p.75−102.
- Ramirez F., Schlicker A., Assenov Y., Lengauer T., Albrecht M. Computational analysis of human protein interaction networks.// Proteomics. -2007. -v.7. -N.15. -p.2541−2552.
- Rasband S.N. The Poincare Map. In Chaotic Dynamics of Nonlinear Systems. New York: Wiley. -1990.
- Ravasz E., Barabasi A.-L. Hierarchical organization in complex networks.// Phys. Rev. E Stat. Nonlin. Soft Matter Phys. v. 67. — 2003. — 26 112.
- Remaut H., Waksman G. Protein-protein interaction through beta-strand addition.// Trends Biochem. Sci. -2006. -v.31. -p. 43644.
- Revillion, F., Lhotellier, V., Hornez, L., Bonneterre, J., Peyrat, J.P. ErbB/HER ligands in human breast cancer, and relationships with their receptors, the bio-pathological features and prognosis. //Ann. Oncol. 2008. -v.19. -Nl. -p. 73−80.
- Richardson B.E., Hulka B.S., David-Pack J.L., Hughes C.L., Van den Berg B.J., Christiansen R.E., Calvin J.A. Levels of maternal serum alpha-fetoprotein
- AFP) in pregnant women and subsequenmt breast cancer risk.// Amer. J. Epidemiol. -1998. -v. 148. -p.719−727.
- Rizzuti B., Sportelli L., Guzzi R. Evidence of reduced flexibility in disulfide bridge-deleted azurin: a molecular dynamics simulation study.// Biophys. Chem. -2001. -v.94. -N.l-2. -p.107−120.
- Rogov S.I., Nekrasov A.N. A numerical measure of amino acid residues similarity based on the analysis of their surroundings in natural protein sequences.// Prot. Eng. -2001. -v. 14. -N.7. -p.45963.
- Rudert F., Zimmermann W., Thompson J. A. Intra- and interspecies analyses of the carcinoembryonic antigen (CEA) gene family reveal independent evolution in primates and rodents.//J. Mol. Evol.-1989. -v.29. -p.126−134.
- Ruiz-Gutierrez V., Moreno R., Moreda W., Copado M.A., Rodriguez-Burgoz A. Detection of squalene in alpha-fetoprotein and fetal serum albumin from bovine.// J. Protein Chem. -2001. -v.20. -N.l. -p. 19−23.
- Ruoslahti E., Seppala M. Studies of carcino-fetal proteins. III. Development of radio-immunoassay for alpha-fetoprotein. Demonstration of alpha-fetoprotein in serum of healthy human adults.// Intern. J. Cancer. -1971. -v.8. -p.374−383.
- Ruoslahti E., Seppala M. a-Foetoprotein in normal human serum.// Nature. -1972. -v.235. -p.161−162.
- Ruoslahti E., Terry W.D. Alpha-fetoprotein and serum albumin show sequence homology.//Nature. -1976. -v.260.p.804−805.
- Ruoslahti E., Seppala M. Alpha-Fetoprotein in cancer and fetal development.// Adv. Cancer Res. -1979. -v.29. -p.275−346.
- Ruoslahti E., Ester T., Seppala M. Binding of bilirubin by bovine and human alpha-fetoprotein.// Biochim. Biophys. Acta. -1979. -v.578. -p.511−519.
- Ruoslahti E., Pierschbacher M.D. New perspectives in cell adhesion: RGD and integrins.// Science. -1987. -v.238. -p.491−497.
- Ruoslahti E., Reed J.C. Anchorage dependence, integrins and apoptosis. // Cell. 1994. -v.77. -p.477−478.
- Ruoslahti E. The RGD story: a personal account.// Matrix Biol. -2003. -v.22. -p.459−465.
- Ruvolo M., Disotell T. R., Allard M. W., Brown W. M., Honeycutt R. L. Resolution of the African hominoid trichotomy by use a mitochondrial gene sequence.// Proc. Natl. Acad. Sci. USA. -1991. -v.88. -p. 1570−1574.
- Ryan C.A., Pearce G., Scheer J., Moura D.S. Polypeptide Hormones. Plant Cell. -2002. -v.14. -Suppl.251-S264.
- Ryan A.J., Chung C.W., Curry S. Crystallographic analysis reveals the structural basis of the high-affinity binding of iophenoxic acid to human serum albumin.// BMC Struct. Biol. -201 la-v.l 1. -p. 18−21.
- Ryan A.J., Ghuman J., Zunszain P.A., Chung C.W., Curry S. Structural basis of binding of fluorescent, site-specific dansylated amino acids to human serum albumin.// J. Struct. Biol. -201 lb-v.l74.p.84−91.
- Sadana P., Park E.A. Characterization of the transactivation domain in the peroxisome-proliferator-activated receptor y co-activator (PGC-1). //Biochem. J. -2007.V.403. -p.511−518.
- Saito S., Kashida S., Inoue T., Shiba K. The role of peptide motifs in the evolution of a protein network. // Nucleic Acids Res. -2007. -v.35. -N.19. -p.6357−6366.
- Saito S., Ojima H., Ichikawa H., Hirohashi S., Kondo T. Molecular background of alpha-fetoprotein in liver cancer cells as revealed by global RNA expression analysis. // Cancer Sci. -2008. -v.99. -p.2402−2409.
- Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. //Mol. Biol. Evol. 1987. — v.4. — p.406−425.
- Salem A-H., Ray D.A., Xing J., Callinan P.A., Myers J.S., Hedges D.J., Garber R.K., Witherspoon D.J., Jorde L.B., Batzer M.A. Alu elements and hominid phylogenetics.// Proc. Natl. Acad. Sci. USA. -2003. -v. 100. -N.22. -p. 12 787−12 791.
- Salomon, D.S., Bianco, C., De Santis, M.D. Cripto: a novel epidermal growth factor (EGF)-related peptide in mammary gland development and neoplasia. //Bioessays. 1999. — v.21. — p. 61−70.
- Samanta U., Bahadur R.P., Chakrabarti P. Quantifying the acessible area of protein residues in their local environment.// Prot. Engin. -2002. -v.15. -N.8. -p.659−667.
- Satta Y., Klein J., Takahata N. DNA archives and our nearest relative: the trichotomy problem revisited.// Mol. Phylogenet. Evol. -2000. -v. 14. -p.259−275.
- Savage C.R., Jr, Hash J. H., Cohen S. Epidermal growth factor. Location of disulfide bonds.// J. Biol. Chem. -1973. -v.247. -p.7612−7672.
- Scholtens D., Vidal M., Gentleman R. Local modeling of global interactome networks.// Bioinformatics. -2005. -v.21. -N.17. -p.3548−3557.
- Screpanti E., Hunte C. Discontinuous membrane helices in transport proteins and their correlation with function.// J. Struct. Biol. -2007. -v.159. -N.2. -p.261−267.
- Selkoe D.J. Alzheimer’s disease: genes, proteins, and therapy.// Physiol. Rev. -2001. v.81. — p. 741−766.
- Sell S., Becker F.F. Alpha-Fetoprotein.// J. Natl. Cancer Inst. -1978. -v.60. -p. 19−26.
- Semeniuk D.J., Boismenu R., Tam J., Weissenhofer W., Murgita R.A. Evidence that immunosuppression is an intrinsic property of the alpha-fetoprotein molecule.// Adv. Exp. Mol. Biol. -1995. -v.383. -p.255−269.
- Semenkova L.N., Dudich E.I., Dudich I.V., Shingarova L.N., Korobko V.G. a-Fetoprotein as a TNF-resistance factor for human hepatocarcinoma cell line HepG2.// Tumor Biol. -1997a. -v. 18. -p.30−40.
- Semenkova L.N., Dudich E.I., Dudich I.V. Induction of apoptosis in human hepatoma cells by alpha-fetoprotein.// Tumor Biol. -1997b. v.18. — p. 261 273.
- Semenkova L.N., Dudich E.I., Dudich I.V. AFP-mediated apoptosis isj Irealized via Ca an tyrosine-kinase independent pathways and do not require protein and RNA synthesis.// Tumor Biol. -1998. -v. 19. Suppl.2. -p.26.
- Semenza J.C., Hardwick K.G., Dean N., Pelham H.R. ERD2, a yeast gene required for the receptor-mediated retrieval of luminal ER proteins from the secretory pathway.// Cell. -1990. -v.61. -N.7. -p.1349−1357.
- Seppala M. Fetal pathophysiology of human alpha-fetoprotein.// Ann. N.Y. Acad. Sei. -1975. -v.259. -p.59−73.
- Seta N., Gayno S., Jezequel-Guer M., Toueg M.L., Erlinger S., Durand G. Sequental study of serum glycoprotein fucosylation in acute hepatitis. // J. Hepatol. -1997-.V.26. -N.2. -p.265−271.
- Shahbazzadeh D. Estrogen binding activities of recombinant alpha-fetoproteins expressed in yeast. // Hokkaido Igaku Zasshi. -1995. -v.70. -p.473−483.
- Shaitan K.V. Protein dynamics and new approaches to the molecular mechanisms of protein functioning. In: Stochastic Dynamics of Reacting Biomolecules (ed. Ebeling, W. et al.) World Scientific. -2003. -p.283−308.
- Shannon P., Markiel A., Ozier O., Baliga N.S., Wang J.T., Ramage D., Amin N., Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks.// Genome Res. -2003. -v.13. -N.ll. -p.2498−2504.
- Shi, Y., Massague, J. Mechanisms of TGF-beta signaling from cell membrane to the nucleus. //Cell. 2003. — v. 113. — p. 685−700.
- Shin E.C., Seong Y.R., Kim C.H., Kim H., Ahn Y.S., Kim K., Kim S. J, Hong S. S, Park J.H. Human hepatocellular carcinoma cells resist to TRAIL-induced apoptosis, and the resistance is abolished by cisplatin.// Exp. Mol. Med. -2002. -v.34. -p. 114−122.
- Shin J. W, Min M, Larrieu-Lahargue F. et al. Proxl promotes lineage-specific expression of fibroblast growth factor (FGF) receptor-3 in lymphatic endothelium: a role for FGF signaling in lymphangiogenesis.// Mol. Biol. Cell. -2006. -v.17. -p.576−578.
- Shoemaker B. A, Panchenko A.R. Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners.// PLoS Comput. Biol. -2007. -v.3. -e43.
- Short S. M, Talbott G. A, Juliano R.L. Integrin-mediated signaling events in human endothelial cells.// Mol. Biol. Cell. -1998. -v.8. -p.1969−1980.
- Shulman-Peleg A., Nussinov R., Wolfson H.J. Recognition of functional sites in protein structures.// J. Mol.Biol. -2004. -v.339. -p.607−633.
- Sibley C.G., Ahlquist J.E. The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization.// J. Mol. Evol. -1984. -v.20. -p.2−15.
- Simard J. R., Zunszain P. A., Hamilton J. A. and Curry S. Location of high and low affinity fatty acid binding sites on human serum albumin revealed by NMR drug-competition analysis.// J. Mol. Biol. -2006. -v.361. -p.336−351.
- Singhal M., Resat H. A domain-based approach to predict protein-protein interactions.// BMC Bioinformatics. 2007. -v.8. -p. 199.
- Skrabanek L., Saini H.K., Bader G.D., Enright A.J. Computational prediction of protein-protein interactions.// Mol. Biotechnol. -2008. -v.38. -N.l. -p.1−17.
- Smith T. F., Waterman M. S. Identification of common molecular subsequences.// J. Mol. Biol. -1981. -v. 147. -p. 195−197.
- Soldi R., Mitola S., Strasly M., Defilippi P., Tarone G., Bussolino F. Role of alpfavbeta3 integrin in the activation of vascular endothelial growth factor receptor-2. // EMBO J. 1999. -v.18. -p.882−892.
- Soloff M.S., Swartz S.K., Pearlmutter F., Kithier K. Binding of 17-?-estradiol by variants of alpha-fetoprotein in rat amniotic fluid. // Biochim. Biophys. Acta. -1972. -v.427. -p.644−651.
- Sonnenschein C., Soto A.M. Growth inhibition of estrogen-sensitive tumor cells in newborn rats. Probable role of alpha-fetoprotein. // J. Natl. Cancer Inst. -1979. -V.63. -N3. -p.835−841.
- Soto A.M., Sonnenschein C. Control of growth of estrogen-sensitive cells: role for alpha-fetoprotein. // Proc. Natl. Acad. Sei. USA. -1980. -v.11. -N.4. -p.2084−2087.
- Speeckaert M., Huang G., Delanghe J. R., Taes Y. E. Biological and clinical aspects of the vitamin D binding protein (Gc-globulin) and its polymorphism.// Clin. Chim. Acta. 2006. -v.372. -p.33−42.
- Spirin V., Mirny L.A. Protein complexes and functional modules in molecular networks.// Proc. Natl. Acad. Sei. USA. -2003. -v. 100. -p. 1 212 312 128.
- Stein R.A., Staros J.V. Insights into the evolution of the ErbB receptor family and their ligands from sequence analysis. //BMC Evol. Biol. 2006. -v.6. -N79. -DOI 10.1186/1471−2148−6-79
- Stenflo J. Structure-function relationships of epidermal growth factor modules in vitamin K-dependent clotting factors.// Blood. 1991. — v. 78. — p. 1637−1651.
- Stewart C. B., Schiling J.W., Wilson A.C. Addaptive evolution in the stomach lisozims of foregut fermenters. // Nature. 1987. — v.330. — p.401−404.
- Stone J., Gullingsrud J., Grayson P., Schulten K. A system for interactive molecular dynamics simulation. In: ACM Symposium on Interactive 3D Graphics. Eds.: Hughes J.F., Sequin C. H. -2001. -p.191−194.
- Sudol M. From Src homology domains to other signaling modules: proposal of the «protein recognition code». // Oncogene. -1998. -v.17. -p.1469−1474.
- Sugio S., Kashima A., Mochizuki S., Noda M., Kobayashi K. Ciystal structure of human serum albumin at 2.5 A resolution.// Protein Eng. -1999. -v.12. -p.43946.
- Suzuki Y., Zeng C.Q.Y., Alpert E. Isolation and partial characterization of a specific alpha-fetoprotein receptor on human monocytes.// J. Clin. Invest. -1992. -v.90. -p.1530−1536.
- Svirshchevskaya E., Alekseeva L., Marchenko A., Benevolenskii N., Berzhec D.M., Nekrasov A.N. Selection of cryptic B-cell epitopes using informational analysis of protein sequences.// J. Bioinform. Comput. Biol. -2006. -v.4. -N2. -p.389−402.
- Swaminathan K., Flynn P., Reece R.J., Marmorstein R. Crystal structure of a PUT3-DNA complex reveals a novel mechanism for DNA recognition by a protein containing a Zn2Cys6 binuclear cluster.// Nat. Struct. Biol. -1997. -v.4. -N.9.-p.751−7759.
- Swartz S.K., Soloff M.S. The lack of estrogen binding by human alpha-fetoprotein.//J. Clin. Endocrinol. Metabol. -1974. -v.39. -N.3. -p.589−591.
- Schwartz M.A., Assoian P.K. Integrins and cell proliferation: regulation of cyclin-dependent kinases via cytoplasmic signaling pathways.// J. Cell Sci. -2001. -v.114. -p.2553−2560.
- Tadaki D.K., Niyogi S.K. The functional importance of hydrophobicity of the tyrosine at position 13 of human epidermal growth factor in receptor binding.// J. Biol.Chem. -1993. -v.268. -p.10 114−10 119.
- Tagirova A.K., Terentiev A. A., Alexandrova I.A., Moldogazieva N.T., Salmasi J.M., Poryadin G.V., Kazimirsky A.N. Determination of apoptosis related peptides in the human alpha-fetoprotein structure.// Tumor biol. -2007. -v.28.-Suppl.l.-p.l06.
- Takahashi Y., Ohta T, Mai M. Angiogenesis of AFP producing gastric carcinoma: correlation with frequent liver metastasis and its inhibition by anti-AFP antibody.// Oncol. Rep. -2004. -v.ll. -p.809−813.
- Takeichi M. Functional correlation between cell adhesion properties and some cell surface proteins.// J. Cell Biol. -1977. -v.75. -p.464174.
- Taketa K. Characterization of sugar chain structures of human AFP by lectin affinity electrophoresis. // Electrophoresis. -1998. -v.19. -p.1774−1779.
- Tan S.-H, Hug W, Sung W.-K., Ng S.-K. A correlated motif approach for finding short linear motifs from interaction networks.// BMC Bioinformatics. -2006. -v.7. -p.502.
- Tatarinov Yu. S, Masyukevich V. N. Immunochemical identification of a new beta-1-globulin in the serum of pregnant women. // Bull. Exp. Biol. Med. -1970. -v.69. -N6. -p.66−68.
- Tatarinov Yu. S, Terentiev A.A., Moldogazieva N. T, Tagirova A.K. Human alpha-fetoprotein and its purification by chromatography on immobilized estrogens.// Tumor Biol. -1991. -v.12. -p.125−130.
- Teglund S., Zhou G.Q., Hammarstrom S. Characterization of cDNA encoding novel pregnancy-specific glycoprotein variants.// Biochem. Biophys. Res. Commun. -1995. -v.211. -p.656−664.
- Teicher BA. Malignant cells, directors of the malignant process: role of transforming growth factor-beta.// Cancer Metastasis Rev. -2001. -v.20. -p.133−143.
- Terentiev A. A. Homology of oligopeptide sequences in primary structures of AFP and some protein inducements of tyrosinkinase activity. // Tumor Biol. -1998. -v.19. -Suppl.2. -p.24.
- Terentiev A.A., Tatarinov Yu.S. Homology of oligopeptide sequences in primary structures of human oncofetal proteins: PSG (TBG, SP1), CEA and AFP. // Tumor Biol. -1998. -v.19. -Suppl.2. -p.37.
- Terentiev A.A., Tagirova A.K. Synthetic oligopeptide sequences LDSYQCT (13−19 human AFP) and ENCYN (17−21 insulin alpha-chain) stimulate uptake of glucose into red blood cells in vitro.// Tumor Biol. -1999. -v.20. -Suppl.2. -p.42.
- Terentiev A.A., Tatarinov Yu.S. Homology of oligopeptide sequences in primary structures of glycodelin, AFP, insulin alpha-chain and EGF. // Tumor Biol. -1999. -v.20. -Suppl.2. -p.44.
- Terentiev A.A., Kazimirski A.N., Salmasi J.M. AFP and apoptosis: synthetic oligopeptide LDSYQCT (AFP 13−19) induced expression CD-95 (FAS, Apo-1). // Tumor Biol. -2000. -v.21. -Suppl.l. -p. 110.
- Terentjev A.A., Tatarinov Yu.S. Development of biospecific sorbents for isolation and purification of human alpha-fetoprotein. // J. Tumor Marker Oncol. -1994. -v.9. —N.l. -p. 15−20.
- Teyra J., Doms A., Schroeder M., Pisabarro M.T. SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces. // BMC Bioinformatics. -2006. -v.7. -p. 104.
- Teyra J., Paszkowski-Rogacz M., Anders G., Pisabarro M.T. SCOWLP classification: structural comparison and analysis of protein binding regions.// BMC Bioinformatics. -2008. -v.8. -p.9.
- Toder V., Bland M., Gold-Gefter L., Nebel J. The effect of alpha-fetoprotein on the growth of placental cells in vitro.// Placenta. -1983. -v.4. -p.79−86.
- Torres J.M., Laborda J., Naval J., Darracq N., Calvo M., Mishal Z., Uriel J. Expression of alpha-fetoprotein receptors by human T-lymphocytes during blastic transformation.// Mol. Immunol. 1989. -v.26. -p.851−857.
- Torres J.M., Darracq N., Uriel J. Membrane proteins from lymphoblastoid cells showing cross-affinity for alpha-fetoprotein and albumin. Isolation and characterization.// Biochim. Biophys. Acta. -1992. -v. 1159. -p.60−66.
- Toyoda, H., Komurasaki, T., Uchida, T., Takayama, Y. Isobe, T., Okuyama, S., Hanada, K. Epiregulin. A novel epidermal growth factor with mitogenic activity for rat primary hepatocytes. // J. Biol.Chem. 1995. — v.270. — p. 7495−7500.
- Trinkle-Mulcany L., Lamond A.I. Toward a high-resolution view of nuclear dynamics.// Science-2007. -v.318. -N.5855. -p.1402−1407.
- Ullah M., Schmidt H., Cho K.H. and Wolkenhauer O. Deterministic modelling and stochastic simulation of biochemical pathways using MATLAB.// Syst. Biol. (Stevenage). -2006. -v.153. -p.53−60.
- Uriel J., de Nechaut B., Dupiers M. Estrogen-binding properties of rat, mouse and man fetospecific serum protein. Demonstration by immuno-autoradiographic methods. // Biochem. Biophys. Res. Commun. -1972. -v.46. -p. 1175−1180.
- Uriel J., Bouillon D., Dupiers M. Affinity chromatography of human, rat and mouse alpha-fetoprotein on estradiol-sepharose adsorbents. // FEBS Letts. -1975. -v.53. -p.305−308.
- Uriel J., Naval J., Laborda J. Alpha-fetoprotein-mediated transfer of arachidonic acid into cultured cloned cells derived from rat rhabdomyosarcoma.//J. Biol. Chem. -1987. -v.262. -p.3579−3585.
- Uriel J. The physiological role of alpha-fetoprotein in cell growth and differentiation.// J. Nucl. Med. Allied Sci. -1989. -v.33. -Suppl.3. -p.12−17.
- Uversky V. N, Narizhneva N.V., Ivanova T.V., Tomashevski A.Yu. Rigidity of human alpha-fetoprotein tertiary structure is under ligand control. // Biochemistry. 1997. -v.36. -p. 13 638−13 645.
- Uversky V.N., Narizhneva N.V., Ivanova T.V., Kirkitadze M.D., Tomashevsky A.Yu. Ligand-free form of human alpha-fetoprotein: evidence for the molten globule state. // FEBS Letts. -1997. -v.410. -p.280−284.
- Uversky V. N, Narizhneva N. V Effect of natural ligands on the structural properties and conformational stability of proteins.// Biochemistry (Mosc.). -1998. -v.63. -N.4. -p.420−433.
- Vakharia D., Mizejewski G.J. Human alpha-fetoprotein peptides bind estrogen receptor and estradiol and suppress breast cancer.// Breast Cancer Res. Treat. -2000. -v.63. -p.41−52.
- Valette G., Vranckx R., Martin M-E., Benassayag C., Nunez E.A. Conformational changes in rodent and human alpha-fetoprotein: influence of fatty acids. // Biochim. Biophys. Acta. -1989. -v.997. -p.302−312.
- Van Oers, N.S., Cohen, B.L., Murgita, R.A. Isolation and characterization of a distinct immunoregulatory isoform of alpha-fetoprotein produced by the normal fetus. //J. Exp. Med. 1989. — v. 170. -N. 3. — p. 811−825.
- Venclovas C., Margelevicius M. Comparative modeling in CASP6 using consensus approach to template selection, sequence-structure alignment, and structure assessment.// Proteins. -2005. -v.61. -S7. -p.99−105.
- Verboven C., Rabijns, A., De Maeyer M., Van Baelen H., Bouillon R., De Ranter C. A structural basis for the unique binding features of the human vitamin D-binding protein.//Nat. Struct. Biol. -2002-v. 9. -p. 131−136.
- Verboven, C., Bogaerts, I., Waelkens, E., Rabijns, A., Van Baelen, H., Bouillon, R., De Ranter, C. Actin-DBP: the perfect structural fit?// Acta Crystallogr., Sect. D. 2003 — v.59. — p. 263−273.
- Villacampa M.J., Moro R., Naval J., Failly-Crepin C., Lampreave F., Uriel J. Alpha-fetoprotein receptors in a human breast cancer cell line.// Biochem. Biophys. Res. Commun. 1984 — 122 — v.3. — p. 1322−1327.
- Vlach J., Hennecke S., Alevizopoulos K., Conti D., Amati B. Growth arrest by the cyclin-dependent kinase inhibitor p27 Kipl is abrogated by c-Myc.// EMBO J. 1996. -v.15. -N23. -p.6595−6604.
- Vlach J., Hennecke S., Amati B. Phosphorylation-dependent degradation of the cyclin-dependent kinase inhibitor p27. // EMBO J. -1997. -v. 16. -N.27. -p.5334−344.
- Voegele A.F., Jercovic L., Wellenzohn B., Eller P., Kronenberg F., Liedl K. R., Dieplinger H. Characterization of the vitamin E-binding properties of human plasma afamin.// Biochemistry. -2002. -v.41. -N.49. -p.14 532−14 538.
- Wachi S., Yoneda K., Wu R. Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues.// Bioinformatics. -2005. -v.21. -N.23. -p.4205−4208.
- Wagner A., Fell D.A. The small world inside large metabolic networks.// Proc. Royal Soc. London. Series B. -2001. -v.268. -p.1803−1810.
- Walker J.L., Assoian R.K. Integrin-dependent signal trasduction regulating cyclin D1 expression and G1 phase cell cycle progression.// Cancer Metastasis Rev. -2005. -v.24. -N.3. -p.383−93.
- Wang X.W., Xu B. Stimulation of tumor-cell growth by alpha-fetoprotein. // Int. J. Cancer. -1998. -v.75. -N.4. -p.596−599.
- Wang X.W., Xie H. Alpha-fetoprotein enhances the proliferation of human hepatoma cells in vitro. // Life Sci. -1999. -v.64. -N.l. -p.17−23.
- Wang X.Y., Degos F., Dubois S. et al. Glypican-3 expression in hepatocellular tumors: diagnostic value for preneoplastic lesions and hepatocellular carcinomas. // Hum. Pathol. -2006. -v.37. -p. 1435−1441.
- Wang Y., Leung F.C. Long inverted repeats in eukaryotic genomes: recombinogenic motifs determine genomic plasticity.// FEBS Lett. -2006. -v.580. -N.5. -p.1277−1284.
- Wang Z., Ruan Y.B., Guan Y., Liu S.H. Expression of IGF-II in early experimental hepatocellular carcinomas and its significance in early diagnosis.// World J. Gastroenterol. -2003. -v.9. -p.267−270.
- Wang Z., Zhang J. In search of the biological significance of modularstructures in protein networks.// PLoS Comput. Biol. -2007. -v.3. -N.6. -el07.386
- Ward C. W, Hoyne P. A, Flegg R.H. Insulin and epidermal growth factor receptors contain the cysteine repeat motif found in the tumor necrosis factor receptor.// Proteins. -1995. -v.22. -N.2. -p. 141−153.
- Wardell M, Wang Z, Ho J. X, Robert J, Ruker F, Ruble J. and Carter D.C. The atomic structure of human methemalbumin at 1.9 A.// Biochem. Biophys. Res. Commun. -2002. -v.291. -p.813−819.
- Wen W, Meinkoth J. L, Tsien R. Y, Taylor S.S. Identification of a signal for rapid export of proteins from the nucleus.// Cell. -1995. -v.82. -p.463−473.
- Wessells J., Wessner D, Parsells R., White K, Finkenzeller D, Zimmermann W, Dveksler G. Pregnancy specific glycoprotein 18 induces IL-10 expression in murine macrophages.// Eur. J. Immunol. 2000. -v.30. -p. 1830−1840.
- Wharton K. A, Johansen K. M, Xu T, Artavanis-Tsakonas S. Nucleotide sequence from the neurogenic locus Notch implies a gene product that shares homology with proteins containg EGF-like repeats.// Cell. 1985. — v.43. — p. 567−581.
- Williams R.W., Chang A., Juretic D., Joughran S. Secondary structure predictions and medium range interactions.// Biochem. Biophys. Acta. -1987. -v.916. -N.2. -p.200−204.
- Wiwatwattana N., Landau C.M., Cope G.J., Harp G.A., Kumar A. Organelle DB: an updated resource of eukaryotic protein localization and function.// Nucleic Acids Res. -2007. -v.35. -D810−814.
- Won Y.S., Lee S.W. Targeted retardation of hepatocarcinoma cells by specific replacement of alpha-fetoprotein RNA.// J. Biotechnol. -2007. -v. 129. -p.614−619.
- Wu G.-X., Lin Y.-M., Zhou T.-H., Gao H., Pei G. Significant down-regulation of alpha-albumin in human hepatoma and its implication.// Cancer Lett. -2000. -v.160. -N.2. -p.229−236.
- Xenarios I. E. E. F., Salwinski L., Duan X. J., Hegney P., Kim S.M., Eisenberg D. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.// Nucleic Acids Res. -2002. -v.30. -N.l. -p.303−305.
- Yachnin S. Demonstration of the inhibitory effect of human AFP on in vitro transformation of human lymphocytes.// Proc. Natl. Acad. Sci. USA. -1976. -v.73. -p.2857−2860.
- Yachnin S. The immunosuppressive properties of a-fetoprotein: a brief overview.// Ann. N.Y. Acad. Sci. -1983. -v.417. -p. 105−107.
- Yakimenko E.F., Karamova E.R., Goussev A.I., Hilgers G., Abelev G.I., Yazova A.K. Epitope mapping of human alpha-fetoprotein.// Tumor Biol. -1998. -v. 19. -p.301−309.
- Yang F., Luna V. J., McAnelly R. D., Naberhaus K. H., Cupples R. L., Bowman B. H. Evolutionary and structural relationships among the group-specific component, albumin and alpha-fetoprotein. // Nucleic Acids Res. — 1985. -v.13. -p.8007−8017.
- Yang L., Tan C.H., Hsieh M.J., Wang J., Duan Y., Cieplak P., Caldwell J., Kollman P.A., Luo R. New-generation Amber united-atom force field. // J. Phys. Chem. -2006. -v. 110. -p. 13 166−13 176.
- Yang X., Zhang Y., Zhang L., Zhang L., Mao J. Silencing alpha-fetoprotein expression induces growth arrest and apoptosis in human hepatocellular cancer cell. // Cancer Lett. -2008. -v.271. -p.281−293.
- Yao D.F., Dong Z.Z., Yang D.M., Zhu Y.S., Jiang D.R., Lu J.X. Peripheral blood AFP-mRNA amplification in the diagnosis and differential diagnosis of hepatocellular carcinoma. // Chin. J. Gen. Surg. -2000. -v. 15. -p.47477.
- Yao D.F., Dong Z -Z., Yao M. Specific molecular markers in hepatocellular carcinoma. Hepatobiliary Pancreat. Dis. Int. -2007. -v.6. -p.3.
- Yook S.H., Oltvai Z.N., Barabasi A.L. Functional and topological characterization of protein interaction networks.// Proteomics. -2004. -v.4. -N.4. -p.928−942.
- Yoshiki T., Itoh T., Shirai T., Noro T., Tomino Y., Hamajama T.I. Primary intracranial yolk sac tumor immunofluorecsent demonstration of alpha-fetoprotein synthesis. // Cancer. 1976. -v.37. -p.2343−2348.
- You L. Toward computational systems biology. // Cell Biochem. Biophys. -2004. -v.40. -N.2. -p.167−184.
- Young M.A., Gonfloni S., Superti-Furga G., Roux B. and Kuriyan J. Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation. // Cell. -2001.-v, 105.-p.l 15−126.
- Zaretsky J.Z., Wreschner D.H. Protein multifunctionality: principles and mechanisms. // Translat. Oncogenomics. 2008. -v.3. -p.99−136.
- Zebhauser R., Kammerer R., Eisenried A., McLellan A., Moore T., Zimmermann W. Identification of a novel group of evolutionary conserved members within the rapidly diverging murine CEA family. // Genomics. -2005. -v.86. -p.566−580.
- Zhang J., Kew R.R. Identification of a region in the vitamin D-binding protein that mediates its C5a hemotactic cofactor function. // J. Biol. Chem. -2004. -v.279. -N.51. -p.53 282−53 287.
- Zhang J., Kumar S. Detection of convergent and parallel evolution at the amino acid sequence level. // Mol. Biol.Evol. 1997. -v.14. -p.1335 — 1338.
- Zhang Y.-, Skolnick J. The protein structure prediction problem could be solved using the current PDB library. // Proc. Natl. Acad. Sci. USA. -2005. -v. 102.-p. 1029−1034.
- Zhang Y. Progress and challenges in protein structure prediction. // Curr. Opin. Struct. Biol. -2008. -v. 18. -p.342−348.
- Zhou S.Y. Recognition and regulation of primary-sequence motifs by signaling modular domains. // Prog. Biophys. Mol. Biol. -1999. -v.71. -p.359−372.
- Zhou M., Veestra T.D. Proteomic analysis of protein complexes. // Proteomics. -2007. -v.7. -N.16. -p.2688−2697.
- Zuckerkandl E., Pauling L. Evolutionary divergence and convergence in proteins. // In: Evolving genes and proteins. Eds: V. Bryson and H. J. Vogel. -Academic Press, New York. -1965. p. 97−166.
- Zunszain P.A., Ghuman J., Komatsu T., Tsuchida E., Curry S. Crystal structure analysis of human serum albumin complexed with hemin and fatty acids. // BMC Struct. Biol. -2003. -v.3. -p.6.
- Zunszain P.A., Ghuman J., McDonagh A.F., Curry S. Crystallographic analisys of human serum albumin complexed with 4Z, 15E-bilirubin-IXalpha. // J. Mol. Biol. -2008. -v.381. -p.394−406.
- Zwillinger, D. (Ed.). CRC Standard Mathematical Tables and Formulae. Boca Raton, FL: CRC Press. -1995. 223p.