ΠΡΡΠ»Π΅Π΄ΠΎΠ²Π°Π½ΠΈΠ΅ Π±ΠΈΠ½Π°ΡΠ½ΡΡ ΠΊΠΎΠΌΠΏΠ»Π΅ΠΊΡΠΎΠ² Π ΠΠ ΠΈ ΡΠΈΠ±ΠΎΡΠΎΠΌΠ½ΠΎΠ³ΠΎ Π±Π΅Π»ΠΊΠ° S7 ΡΡΠ±Π°ΠΊΡΠ΅ΡΠΈΠΉ
Kyriatsoulis, A., et al., RNA-protein cross-linking in Escherichia coli ribosomal subunits: localization of sites on 16S RNA which are cross-linked to proteins S17 and S21 by treatment with 2-iminothiolane. Nucleic Acids Res, 1986. 14(3): p. 1171β86. Greuer, Π., Π. Thiede, and R. Brimacombe, The cross-link from the upstream region of mRNA to ribosomal protein S7 is located in the C-' terminal… Π§ΠΈΡΠ°ΡΡ Π΅ΡΡ >
ΠΡΡΠ»Π΅Π΄ΠΎΠ²Π°Π½ΠΈΠ΅ Π±ΠΈΠ½Π°ΡΠ½ΡΡ ΠΊΠΎΠΌΠΏΠ»Π΅ΠΊΡΠΎΠ² Π ΠΠ ΠΈ ΡΠΈΠ±ΠΎΡΠΎΠΌΠ½ΠΎΠ³ΠΎ Π±Π΅Π»ΠΊΠ° S7 ΡΡΠ±Π°ΠΊΡΠ΅ΡΠΈΠΉ (ΡΠ΅ΡΠ΅ΡΠ°Ρ, ΠΊΡΡΡΠΎΠ²Π°Ρ, Π΄ΠΈΠΏΠ»ΠΎΠΌ, ΠΊΠΎΠ½ΡΡΠΎΠ»ΡΠ½Π°Ρ)
Π‘ΠΎΠ΄Π΅ΡΠΆΠ°Π½ΠΈΠ΅
- ΠΠΠΠΠΠΠΠ
- 3. ΠΠΠΠΠ ΠΠΠ’ΠΠ ΠΠ’Π£Π Π«. Π ΠΠΠΠ‘ΠΠΠΠ«Π ΠΠΠΠΠ S7 ΠΠ£ΠΠΠΠ’ΠΠ ΠΠ, ΠΠ’Π£Π Π Π Π€Π£ΠΠΠ¦ΠΠ―
- 3. 1. ΠΠ΅ΡΠ²ΠΈΡΠ½Π°Ρ ΡΡΡΡΠΊΡΡΡΠ° ΡΠΈΠ±ΠΎΡΠΎΠΌΠ½ΠΎΠ³ΠΎ Π±Π΅Π»ΠΊΠ° S7 ΡΡΠ±Π°ΠΊΡΠ΅ΡΠΈΠΉ
- 3. 2. ΠΡΡΡΠΈΠ΅ ΡΡΡΡΠΊΡΡΡΡ Π±Π΅Π»ΠΊΠ° S7 ΡΡΠ±Π°ΠΊΡΠ΅ΡΠΈΠΉ
- 3. 3. ΠΠ΅Π»ΠΎΠΊ S7 — ΠΊΠΎΠΌΠΏΠΎΠ½Π΅Π½Ρ ΠΌΠ°Π»ΠΎΠΉ ΡΡΠ±ΡΠ°ΡΡΠΈΡΡ ΡΠΈΠ±ΠΎΡΠΎΠΌΡ
- 3. 4. ΠΠ΅Π»ΠΎΠΊ S7 — ΡΠ΅ΠΏΡΠ΅ΡΡΠΎΡ ΡΠΎΠΏΡΡΠΆΠ΅Π½Π½ΠΎΠΉ ΡΡΠ°Π½ΡΠ»ΡΡΠΈΠΈ str ΠΎΠΏΠ΅ΡΠΎΠ½Π°
- 4. Π ΠΠΠ£ΠΠ¬Π’ΠΠ’Π« Π ΠΠΠ‘Π£ΠΠΠΠΠΠ
- 4. 1. ΠΠΎΠΌΠΏΡΡΡΠ΅ΡΠ½ΠΎΠ΅ ΠΌΠΎΠ΄Π΅Π»ΠΈΡΠΎΠ²Π°Π½ΠΈΠ΅ ΡΡΠ΅ΡΠΈΡΠ½ΠΎΠΉ ΡΡΡΡΠΊΡΡΡΡ EcoS7 ΠΈ Π΅Π³ΠΎ ΠΊΠΎΠΌΠΏΠ»Π΅ΠΊΡΠΎΠ² Ρ 16S ΡΠ ΠΠ
- 4. 2. ΠΠΎΠ½ΡΡΡΡΠΈΡΠΎΠ²Π°Π½ΠΈΠ΅ ΡΡΠΏΠ΅Ρ-ΠΏΡΠΎΠ΄ΡΡΠ΅Π½ΡΠ° Π. coli Π΄Π»Ρ Π±Π΅Π»ΠΊΠ° EcoS7 ΠΈ Π²ΡΠ΄Π΅Π»Π΅Π½ΠΈΠ΅ EcoS7 ΠΈ TthS
- 4. 3. ΠΠ»ΠΎΠ½ΠΈΡΠΎΠ²Π°Π½ΠΈΠ΅ EcoStr ΠΌΠ ΠΠ ΠΈ ΠΏΠΎΠ»ΡΡΠ΅Π½ΠΈΠ΅ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠΎΠ² Π ΠΠ
- 4. 4. ΠΠ·Π°ΠΈΠΌΠΎΠ΄Π΅ΠΉΡΡΠ²ΠΈΠ΅ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠ° Eco16S ΡΠ ΠΠ Ρ Π±Π΅Π»ΠΊΠ°ΠΌΠΈ EcoS7 ΠΈ
- TthS
- 4. 5. ΠΠ΄Π΅Π½ΡΠΈΡΠΈΠΊΠ°ΡΠΈΡ ΠΌΠ΅ΡΡ ΠΊΠΎΠ½ΡΠ°ΠΊΡΠΎΠ² Π±Π΅Π»ΠΊΠΎΠ² EcoS7 ΠΈ TthS7 Ρ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠΎΠΌ Eco16S ΡΠ ΠΠ ΠΌΠ΅ΡΠΎΠ΄ΠΎΠΌ Π£Π€-ΠΈΠ½Π΄ΡΡΠΈΡΡΠ΅ΠΌΠΎΠΉ «ΡΡΠΈΠ²ΠΊΠΈ» Ρ Π½ΡΠ»Π΅Π²ΠΎΠΉ Π΄Π»ΠΈΠ½ΠΎΠΉ
- 4. 6. ΠΠ·ΡΡΠ΅Π½ΠΈΠ΅ Π²Π»ΠΈΡΠ½ΠΈΡ Π±Π΅Π»ΠΊΠΎΠ² EcoS7 ΠΈ TthS7 Π½Π° ΡΡΡΡΠΊΡΡΡΡ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠ° Eco16S ΡΠ ΠΠ
- 4. 7. ΠΠ·Π°ΠΈΠΌΠΎΠ΄Π΅ΠΉΡΡΠ²ΠΈΠ΅ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠ° EcoStr ΠΌΠ ΠΠ Ρ Π±Π΅Π»ΠΊΠ°ΠΌΠΈ EcoS7 ΠΈ
- TthS
- 4. 8. ΠΠ΄Π΅Π½ΡΠΈΡΠΈΠΊΠ°ΡΠΈΡ ΠΌΠ΅ΡΡ ΠΊΠΎΠ½ΡΠ°ΠΊΡΠΎΠ² Π±Π΅Π»ΠΊΠΎΠ² EcoS7 ΠΈ TthS7 Ρ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠΎΠΌ EcoStr ΠΌΠ ΠΠ ΠΌΠ΅ΡΠΎΠ΄ΠΎΠΌ Π£Π€-ΠΈΠ½Π΄ΡΡΠΈΡΡΠ΅ΠΌΠΎΠΉ «ΡΡΠΈΠ²ΠΊΠΈ» Ρ Π½ΡΠ»Π΅Π²ΠΎΠΉ Π΄Π»ΠΈΠ½ΠΎΠΉ
- 4. 9. ΠΠ·ΡΡΠ΅Π½ΠΈΠ΅ Π²Π»ΠΈΡΠ½ΠΈΡ Π±Π΅Π»ΠΊΠΎΠ² EcoS7 ΠΈ TthS7 Π½Π° ΡΡΡΡΠΊΡΡΡΡ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠ° EcoStr ΠΌΠ ΠΠ
- 5. ΠΠΠ‘ΠΠΠ ΠΠΠΠΠ’ΠΠΠ¬ΠΠΠ― Π§ΠΠ‘Π’
- 5. 1. ΠΡΠΏΠΎΠ»ΡΠ·ΡΠ΅ΠΌΡΠ΅ ΡΡΠ°ΠΌΠΌΡ ΠΌΠΈΠΊΡΠΎΠΎΡΠ³Π°Π½ΠΈΠ·ΠΌΠΎΠ² ΠΈ ΡΠ΅Π°ΠΊΡΠΈΠ²Ρ
- 5. 2. ΠΡΠΏΠΎΠ»ΡΠ·ΡΠ΅ΠΌΡΠ΅ ΠΌΠ΅ΡΠΎΠ΄Ρ
- ΠΠ«ΠΠΠΠ«
6 ΠΠ«ΠΠΠΠ«:
1. ΠΠ΅ΡΠΎΠ΄Π°ΠΌΠΈ ΠΊΠΎΠΌΠΏΡΡΡΠ΅ΡΠ½ΠΎΠ³ΠΎ Π°Π½Π°Π»ΠΈΠ·Π° ΠΈ ΠΌΠΎΠ΄Π΅Π»ΠΈΡΠΎΠ²Π°Π½ΠΈΡ in silico ΠΏΠΎΠΊΠ°Π·Π°Π½ΠΎ, ΡΡΠΎ Π΄Π²Π° Π±Π΅Π»ΠΊΠ°-Π°Π½Π°Π»ΠΎΠ³Π° EcoS7 ΠΈ TthS7 ΠΏΠΎ ΠΏΠ΅ΡΠ²ΠΈΡΠ½ΠΎΠΉ ΡΡΡΡΠΊΡΡΡΠ΅ ΠΈΠ΄Π΅Π½ΡΠΈΡΠ½Ρ Π½Π° 52%, Π° Π² Π·ΠΎΠ½Π΅ Π ΠΠ-Π±Π΅Π»ΠΊΠΎΠ²ΡΡ ΠΊΠΎΠ½ΡΠ°ΠΊΡΠΎΠ² Π² 30S ΡΡΠ±ΡΠ°ΡΡΠΈΡΠ΅ — Π½Π° 83%. ΠΠΎΠ΄ΠΎΠ±Π½Π°Ρ Π²ΡΡΠΎΠΊΠ°Ρ ΠΊΠΎΠ½ΡΠ΅ΡΠ²Π°ΡΠΈΠ²Π½ΠΎΡΡΡ Π΄Π°Π΅Ρ Π²ΠΎΠ·ΠΌΠΎΠΆΠ½ΠΎΡΡΡ ΡΠΊΡΠΏΠ΅ΡΠΈΠΌΠ΅Π½ΡΠ°Π»ΡΠ½ΠΎ ΡΡΠ°Π²Π½ΠΈΡΡ ΡΠ²ΠΎΠΉΡΡΠ²Π° Π³ΠΎΠΌΠΎΠ»ΠΎΠ³ΠΈΡΠ½ΡΡ ΠΈ Π³Π΅ΡΠ΅ΡΠΎΠ»ΠΎΠ³ΠΈΡΠ½ΡΡ Π ΠΠ-Π±Π΅Π»ΠΊΠΎΠ²ΡΡ ΠΊΠΎΠΌΠΏΠ»Π΅ΠΊΡΠΎΠ², ΠΏΡΠΈΡΠ΅ΠΌ TthS7 ΠΌΠΎΠΆΠ½ΠΎ ΡΠ°ΡΡΠΌΠ°ΡΡΠΈΠ²Π°ΡΡ ΠΊΠ°ΠΊ «ΠΏΡΠΈΡΠΎΠ΄Π½ΡΠΉ ΠΌΡΡΠ°Π½Ρ» EcoS7.
2. ΠΠΎΠ»ΡΡΠ΅Π½ ΡΡΠΏΠ΅Ρ-ΠΏΡΠΎΠ΄ΡΡΠ΅Π½Ρ Π. coli Π΄Π»Ρ EcoS7. ΠΠΎΠΊΠ°Π·Π°Π½ΠΎ, ΡΡΠΎ Π΄Π»Ρ ΡΡΠ°Π±ΠΈΠ»ΡΠ½ΠΎΠΉ ΡΠΊΡΠΏΡΠ΅ΡΡΠΈΠΈ ΡΠ΅Π³ΡΠ»ΡΡΠΎΡΠ½ΠΎΠ³ΠΎ Π±Π΅Π»ΠΊΠ° Π½Π΅ΠΎΠ±Ρ ΠΎΠ΄ΠΈΠΌΡ ΡΠΈΡΡΠ΅ΠΌΡ Ρ ΡΠ°ΠΌΡΠΌ ΠΆΠ΅ΡΡΠΊΠΈΠΌ ΠΊΠΎΠ½ΡΡΠΎΠ»Π΅ΠΌ ΡΠ΅Π³ΡΠ»ΡΡΠΈΠΈ ΡΠΊΡΠΏΡΠ΅ΡΡΠΈΠΈ (pET28b/BL21 DE3 pLysE).
3. Π£ΡΡΠ°Π½ΠΎΠ²Π»Π΅Π½ΠΎ, ΡΡΠΎ Π²Π·Π°ΠΈΠΌΠΎΠ΄Π΅ΠΉΡΡΠ²ΠΈΠ΅ in vitro EcoS7 ΠΈ TthS7 Ρ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠΎΠΌ 16S ΡΠ ΠΠ, Π² ΡΠ΅Π»ΠΎΠΌ ΠΎΠ΄Π½ΠΎΡΠΈΠΏΠ½ΠΎ, Π½ΠΎ ΠΎΡΠ»ΠΈΡΠ½ΠΎ ΠΎΡ ΡΠ°ΠΊΠΎΠ²ΡΡ Π² 30S ΡΡΠ±ΡΠ°ΡΡΠΈΡΠ΅ ΡΠΈΠ±ΠΎΡΠΎΠΌ.
4. Π£ΡΡΠ°Π½ΠΎΠ²Π»Π΅Π½ΠΎ, ΡΡΠΎ Π±Π΅Π»ΠΎΠΊ S7 Π²Π·Π°ΠΈΠΌΠΎΠ΄Π΅ΠΉΡΡΠ²ΡΠ΅Ρ Ρ ΡΡΠ°ΡΡΠΊΠΎΠΌ Π±ΠΈΡΡΡΠΊΠ°ΡΠΈΠΈ ΠΌΠ΅ΠΆΡΠΈΡΡΡΠΎΠ½Π½ΠΎΠ³ΠΎ ΡΡΠ°Π³ΠΌΠ΅Π½ΡΠ° S12-S7 str ΠΌΠ ΠΠ, ΡΡΠΎ ΠΏΡΠΈΠ²ΠΎΠ΄ΠΈΡ ΠΊ ΠΈΠ·ΠΌΠ΅Π½Π΅Π½ΠΈΡ ΠΊΠΎΠ½ΡΠΎΡΠΌΠ°ΡΠΈΠΈ Π² ΠΎΡΠ½ΠΎΠ²Π°Π½ΠΈΠΈ ΡΠΏΠΈΠ»ΡΠΊΠΈ, Π³Π΄Π΅ ΡΠ°ΡΠΏΠΎΠ»ΠΎΠΆΠ΅Π½Ρ ΡΠΈΠ³Π½Π°Π»Ρ ΡΡΠ°Π½ΡΠ»ΡΡΠΈΠΈ. ΠΠ° ΠΎΡΠ½ΠΎΠ²Π°Π½ΠΈΠΈ ΡΡΠΎΠ³ΠΎ ΠΏΡΠ΅Π΄Π»ΠΎΠΆΠ΅Π½Π° Π³ΠΈΠΏΠΎΡΠ΅Π·Π° ΠΎ ΠΌΠ΅Ρ Π°Π½ΠΈΠ·ΠΌΠ΅ ΡΠ΅Π³ΡΠ»ΡΡΠΈΠΈ ΡΠΎΠΏΡΡΠΆΠ΅Π½Π½ΠΎΠΉ ΡΡΠ°Π½ΡΠ»ΡΡΠΈΠΈ.
1. Reinbolt, J., D. Tritsch, and Π. Wittmann-Liebold, The primary structure of ribosomal protein S7 from E. coli strains Π and B. Biochimie, 1979. 61(4): p. 501−22.
2. Johanson, U. and D. Hughes, Comparison of the complete sequence of the stroperon in Salmonella typhimurium and Escherichia coli. Gene, 1992. 120(1): p. 93−8.
3. Held, W. and M. Nomura, Functional homology between the 30S ribosomal protein S7 from E. coli K12 and S7 from E. coli MRE600. Mol Gen Genet, 1973. 122(1): p. 11−4.
4. Reinbolt, J. and D. Tritsch, The primary structure of ribosomal protein S7 from E. coli strains Π and B. FEBS Lett, 1978. 91(2): p. 297−301.
5. Tritsch, D., J. Reinbolt, and B. Wittmann-Liebold, The primary structure of ribosomal protein S7 from Escherichia coli strains Π and B. Sequence of the C-terminal region ofS7KandS7B. FEBS Lett, 1977. 77(1): p. 89−93.
6. Yakhnin, A.V., D.P. Vorozheykina, and N.i. Matvienko, Nucleotide sequence of the Thermus thermophilus HB8 rps12 and rps7 genes coding for the ribosomal proteins S12andS7. Nucleic Acids Res, 1990. 18(12): p. 3659.
7. Morozov, P. S., Dynamics of evolutionary rates of proteins from small ribosomal subunits. Genetika, 1994. 30(1): p. 37−44.
8. Karginov, A.V., et al., In vivo assembly of plasmid-expressed ribosomal protein S7 of Thermus thermophilus into Escherichia coli ribosomes and conditions of its overexpression. FEBS Lett, 1995. 369(2−3): p. 158−60.
9. Hosaka, H., et al., Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor. Structure, 1997. 5(9): p. 1199−208.
10. Wimberly, B.T., S.W. White, and V. Ramakrishnan, The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids. Structure, 1997. 5(9): p. 1187−98.
11. Kimura, M., The nucleotide sequences of Bacillus stearothermophilus ribosomal protein S12 and S7 genes: comparison with the stroperon of Escherichia coli. Agric Biol Chem, 1991. 55(1): p. 207−13.
12. Kuwano, Y., J. Olvera, and I.G. Wool, The primary structure of rat ribosomal protein S5. A ribosomal protein present in the rat genome in a single copy. J Biol Chem, 1992. 267(35): p. 25 304−8.
13. Murzin, A.G., et al., SCGP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol, 1995. 247(4): p. 536−40.
14. Shimizu, M., et al., Characterization of the binding ofHU and IHF, homologous histone-like proteins of Escherichia coli, to curved and uncurvedDNA. Biochim Biophys Acta, 1995.1264(3): p. 330−6.
15. Rice, P.A., et al., Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell, 1996. 87(7): p. 1295−306.
16. Vis, H., et al., Solution structure of the HU protein from Bacillus stearothermophilus. J Mol Biol, 1995. 254(4): p. 692−703.
17. Shestopalov, B.V., RNA-recognizing function of the DNA-recognizing structure helix-tumhelix in ribosomal proteins S4 and S7 of Escherichia coli and plant chloroplasts. Mol Biol (Mosk), 1988. 22(3): p. 624−7.
18. White, S.W., et al., A protein structural motif that bends DNA. Proteins, 1989. 5(4): p. 281−8.
19. Boelens, R., et al., Structure and dynamics of the DNA binding protein HU from Bacillus stearothermophilus by NMR spectroscopy. Biopolymers, 1996. 40(5): p. 553−9.
20. Cate, J.H., et al., X-ray crystal structures of 70S ribosome functional complexes. Science, 1999. 285(5436): p. 2095;104.
21. Wimberly, B.T., et al., Structure of the 30S ribosomal subunit. Nature, 2000. 407(6802): p. 327−39.
22. Tanaka, I., et al., Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA. Rna, 1998. 4(5): p. 542−50.
23. Elson, D. and P. Spitnik-Elson, A three-dimensional model of domain III of the Escherichia coli small ribosomal subunit. Biochimie, 1987. 69(9): p. 9919.
24. Harada, N., et al., Crystallization and preliminary X-ray crystallographic study of the ribosomal protein S7 from Bacillus stearothermophilus. J Struct Biol, 1997. 120(1): p. 112−4.
25. Nowotny, V. and K.H. Nierhaus, Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7. Biochemistry, 1988. 27(18): p. 7051−5.
26. Culver, G.M. and H.F. Noiler, Efficient reconstitution of functional Escherichia coli 30S ribosomal subunits from a complete set of recombinant small subunit ribosomal proteins. Rna, 1999. 5(6): p. 832−43.
27. Vasiiiev, V.D., V.E. Koteliansky, and G.V. Rezapkin, The complex of 16 S RNA with proteins S4, S7, S8, S15 retains the main morphological features of the 30 S ribosomal subparticle. FEBS Lett, 1977. 79(1): p. 170−4.
28. Nolier, H.F., et a!., Translocation oft. RNA during protein synthesis. FEBS Lett, 2002. 514(1): p. 11−6.
29. Yusupov, M.M., et al., Crystal structure of the ribosome at 5.5 A resolution. Science, 2001. 292(5518): p. 883−96.
30. Rosen, K.V. and R.A. Zimmerman, Photoaffinity labeling of 30S-subunit proteins S7 and S11 by 4- thiouridine-substituted tRNA (Phe) situated at the P site of Escherichia coli ribosomes. Rna, 1997. 3(9): p. 1028−36.
31. Osswald, M., T. Doring, and R. Brimacombe, The ribosomal neighbourhood of the central fold of tRNA: cross-links from position 47 of tRNA located at the A, P or E site. Nucleic Acids Res, 1995. 23(22): p. 4635−41.
32. Miyamoto, A., et al., Role of the N-terminal region of ribosomal protein S7 in its interaction with 16S rRNA which binds to the concavity formed by the beta-ribbon arm and the alpha-helix. Eur J Biochem, 1999. 266(2): p. 591 598.
33. Robert, F., et al., Mapping of the RNA recognition site of Escherichia coli ribosomal protein S7. Rna, 2000. 6(11): p. 1649−59.
34. Fredrick, K., G.M. Dunny, and H.F. Nolier, Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits. J Mol Biol, 2000. 298(3): p. 379−94.
35. Urlaub, H., et al., Contact sites of peptide-oligoribonucleotide cross-links identified by a combination of peptide and nucleotide sequencing with MALDI MS. J Protein Chem, 1997. 16(5): p. 375−83.
36. Chiaruttini, C., et al., Multiple crosslinks of proteins S7 and S9 to domains 3 and 4 of 16S ribosomal RNA in the Escherichia coli 30S particle. Eur J Biochem, 1986. 160(2): p. 363−70.
37. Chiaruttini, C., et al., Crosslinking of ribosomal proteins S4, S5, S7, S8, S11, S12 and S18 to domains 1 and 2 of 16S rRNA in the Escherichia coli 30S particle. Biochimie, 1989. 71(7): p. 839−52.
38. Ehresmann, Π., et al., Effect of ultraviolet irradiation on 30-S ribosomal subunits. Identification of the RNA region crosslinked to protein S7. Eur J Biochem, 1980. 104(1): p. 255−62.
39. Hajnsdorf, E., A. Favre, and A. Expert-Bezancon, Multiple crosslinks of proteins S7, S9, S13 to domains 3 and 4 of 16S RNA in the 30S particle. Nucleic Acids Res, 1986. 14(10): p. 4009−23.
40. Skold, S.E., RNA-proiein complexes identified by crosslinking of polysomes. Biochimie, 1981. 63(1): p. 53−60.
41. Moller, K. and R. Brimacombe, Specific cross-linking of proteins S7 and L4 to ribosomal RNA, by UV irradiation of Escherichia coli ribosomal subunits. Mol Gen Genet, 1975. 141(4): p. 343−55.
42. Ehresmann, Π., et a!., Studies of the binding sites of Escherichia coli ribosomal protein S7 with 16S RNA by ultraviolet irradiation. FEBS Lett, 1976. 67(3): p. 316−9.
43. Wower, I. and R. Brimacombe, The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane. Nucleic Acids Res, 1983. 11(5): p. 1419−37.
44. Kyriatsoulis, A., et al., RNA-protein cross-linking in Escherichia coli ribosomal subunits: localization of sites on 16S RNA which are cross-linked to proteins S17 and S21 by treatment with 2-iminothiolane. Nucleic Acids Res, 1986. 14(3): p. 1171−86.
45. Abdurashidova, G.G., E.A. Tsvetkova, and E.I. Budowsky, Nucleotide residues oftRNA, directly interacting with proteins within the complex of the 30 S subunit of E. coli ribosome with poly (U) and NAcPhe-tRNA (Phe). FEBS Lett, 1989. 243(2): p. 299−302.
46. Broude, N.E., et al., Proteins of the 30-S subunit of Escherichia coli ribosomes which interact directly with natural mRNA. Eur J Biochem, 1983. 132(1): p. 139−45.
47. Sylvers, L.A., et al., Photochemical cross-linking of the anticodon loop of yeast tRNA (Phe) to 30S-subunit protein S7 at the ribosomal A and P sites. Biochimie, 1992. 74(4): p. 381−9.
48. Greuer, Π., Π. Thiede, and R. Brimacombe, The cross-link from the upstream region of mRNA to ribosomal protein S7 is located in the C-' terminal peptide: experimental verification of a prediction from modeling studies. Rna, 1999. 5(12): p. 1521−5.
49. Brandt, R. and C.O. Gualerzi, Ribosomal localization of the mRNA in the 30S initiation complex as revealed by UV crosslinking. FEBS Lett, 1992. 311(3): p. 199−202.
50. Dontsova, O., et al., Three widely separated positions in the 16S RNA lie in or close to the ribosomal decoding regiona site-directed cross-linking study with mRNA analogues. Ernbo J, 1992. 11(8): p. 3105−16.
51. Dontsova, Π.Π., et al., Identification of the Escherichia coli 30S ribosomal subunit protein neighboring mRNA during initiation of translation. Biochimie, 1992. 74(4): p. 363−71.
52. Powers, Π’., et al., Probing the assembly of the 3' major domain of 16 S ribosomal RNA. Quaternary interactions involving ribosomal proteins S7, S9 and S19. J Mol Biol, 1988. 200(2): p. 309−19.
53. Wiener, L. and R. Brimacombe, Protein binding sites on Escherichia coli 16S RNARNA regions that are protected by proteins S7, S14 and S19 in the presence or absence of protein S9. Nucleic Acids Res, 1987. 15(9): p. 3653−70.
54. Wiener, L., D. Schuler, and R. Brimacombe, Protein binding sites on Escherichia coli 16S ribosomal RNARNA regions that are protected by proteins S7, S9 and S19, and by proteins S8, S15 and S17. Nucleic Acids Res, 1988. 16(4): p. 1233−50.
55. Gimautdinova, O.I., et al., The proteins of the messenger RNA binding site of Escherichia coli ribosomes. Nucleic Acids Res, 1981. 9(14): p. 3465−81.
56. Gorelic, L., Photoinduced cross-linkage, in situ, of Escherichia coli 30S ribosomal proteins to 16S rRNA: identification of cross-linked proteins and relationships between reactivity and ribcsome structure. Biochemistry, 1976. 15(16): p. 3579−90.
57. Lemieux, G., Chemical modifications of Escherichia coli ribosomal proteins S4, S7, and S8 in regard to their capacity for binding 16 S RNA. Can J Biochem, 1974. 52(11): p. 1038−43.
58. Mandiyan, V., et al., Protein-induced conformational changes in 16 S ' ribosomal RNA during the initial assembly steps of the Escherichia coli 30 S ribosomal subunit. J Mol Biol, 1989. 210(2): p. 323−36.
59. Powers, Π’., et al., Probing the assembly of the 3' major domain of 16 S rRNA. Interactions involving ribosomal proteins S2, S3, S10, S13 and S14. J Mol Biol, 1988. 201(4): p. 697−716.
60. Samaha, R.R., et al., Independent in vitro assembly of a ribonucleoprotein particle containing the 3' domain of 16S rRNA. Proc Natl Acad Sci U S A, 1994. 91(17): p. 7884−8.
61. Dragon, F. and L. Brakier-Gingras, Interaction of Escherichia coli ribosomal protein S7 with 16S rRNA. Nucleic Acids Res, 1993. 21(5): p. 1199−203.
62. Dragon, F., Π‘. Payant, and L. Brakier-Gingras, Mutational and structural analysis of the RNA binding site for Escherichia coli ribosomal protein S7. J Mol Biol, 1994. 244(1): p. 74−85.
63. Schwarzbauer, J. and G.R. Craven, Apparent association constants forE. coli ribosomal proteins S4, S7, S8, S15, S17 and S20 binding to 16S RNA. Nucleic Acids Res, 1981. 9(9): p. 2223−37.
64. Robert, F. and L. Brakier-Gingras, Ribosomal protein S7 from Escherichia coli uses the same determinants to bind 16S ribosomal RNA and its messenger RNA. Nucleic Acids Res, 2001. 29(3): p. 677−82.
65. Barnsley, P.G. and B.H. Sells, Unbalanced ribosomal protein synthesis in a strain of Escherichia coli containing a cloned, truncated 16-S ribosomal RNA gene. Eur J Biochem, 1983.132(2): p. 389−94.
66. Nomura, M., et al., Feedback regulation of ribosomal protein gene expression in Escherichia coli: structural homology of ribosomal RNA and ribosomal protein MRNA. Proc Natl Acad Sci USA, 1980. 77(12): p. 70 848.
67. Yates, J.L., A.E. Arfsten, and M. Nomura, In vitro expression of Escherichia coli ribosomal protein genes: autogenous inhibition of translation. Proc Natl Acad Sci USA, 1980. 77(4): p. 1837−41.
68. Saito, K., L.C. Mattheakis, and M. Nomura, Post-transcriptional regulation of the str operon in Escherichia coli. Ribosomal protein S7 inhibits coupled translation of S7 but not its independent translation. J Mol Biol, 1994. 235(1): p. 111−24.
69. Dean, D., J.L. Yates, and M. Nomura, Identification of ribosomal protein S7 as a repressor of translation within the str operon of E. coli. Cell, 1981. 24(2): p. 413−9.
70. Krasny, L., et al., Cloning and characterization of the str operon and elongation factor Tu expression in Bacillus stearothermophilus. J Bacterid, 2000. 182(21): p. 6114−22.
71. Pedersen, S. and S. Reeh, Functional mRNA half lives in E. coli. Mo! Gen Genet, 1978. 166(3): p. 329−36.
72. Adhin, M.R. and J. van Duin, Scanning model for translational reinitiation in eubacteria. J Moi Biol, 1990. 213(4): p. 811−8.
73. Post, L.E. ana M. Nomura, DNA sequences from the str operon of Escherichia coli. J Biol Chem, 1980. 255(10): p. 4660−6.
74. Saito, Π. and Π. Nomura, Post-transcriptional regulation of the str operon in Escherichia coli. Structural and mutational analysis of the target site for translational repressor S7. J Mol Biol, 1994. 235(1): p. 125−39.
75. Guex, N. and M.C. Peitsch, SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis, 1997. 18(15): p. 2714−23.
76. Bairoch, A. and R. Apweiler, The SWISS-PROTprotein sequence data bank and its suppl&ment TrEMBL in 1999. Nucleic Acids Res, 1999. 27(1): p. 49−54.
77. Bairoch, A. and R. Apweiler, The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1998. Nucleic Acids Res, 1998. 26(1): p. 38−42.
78. Peitsch, M.C., ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling. Biochem Soc Trans, 1996. 24(1): p. 274−9.
79. Pichert, G. and R.A. Stahel, Organizing cancer genetics programs: the Swiss model. J Clin Oncol, 2000.18(21 Suppl): p. 65S-9S.
80. Schappach, A. and H.D. Holtje, Molecular modelling of 17 alpha-hydroxylase-17,20-lyase. Pharmazie, 2001. 56(6): p. 435−42.
81. Tapia, O. and J. Aqvist, Molecular dynamics as a tool for structural and functional predictions: the retinol binding protein and chloroplast C-terminal fragment of the L12 ribosomal protein cases. Prog Clin Biol Res, 1989. 289: p. 55−64.
82. Aqvist, J., M. Leijonmarck, and O. Tapia, A molecular dynamics study of the C-terminal fragment of the L7/L12 ribosomal protein. II. Effects of intermodular interactions on structure and dynamics. Eur Biophys J, 1989. 16(6): p. 327−39.
83. Kim, J.H. and A.G. Marshall, Structural investigation of helices II, III, and IV of B. megaterium 5S ribosomal RNA by molecular dynamics calculations. Biopolymers, 1992. 32(9): p. 1263−70.
84. Nierhaus, K.H. and F. Dohme, Total reconstitution of functionally active 50S ribosomal subunits from Escherichia coli. Proc Natl Acad Sci USA, 1974. 71(12): p. 4713−7.
85. SO. Boliag, D.M., M.D. Rozycki, and S.J. Edelstein, Protein Metods. second ed. 1996, New-York: A John Willev & SONS, INC.
86. ΠΠ°Π½ΠΈΠ°ΡΠΈΡ. Π’., 3. Π€ΡΠΈΡ, and Π. Π‘ΡΠΌΠ±ΡΡΠΊ, ΠΠΎΠ»Π΅ΠΊΠΊΡΠ»ΡΡΠ½ΠΎΠ΅ ΠΊΠ»ΠΎΠ½ΠΈΡΠΎΠ²Π°Π½ΠΈΠ΅, ed. Π. Π. ΠΠ°Π΅Π². 1984, ΠΠΎΡΠΊΠ²Π°: «ΠΠΈΡ» .
87. Handbook, Q. 1995: QIAGEN.93. «Sequenase 2.0». United States Biochemicals, 1990.
88. Henco, K., The QIAexpressionist: The High-Level Expression & Protein Purification SystemQIAGEN. 1992, Hamburg.
89. Spiridonova, V.A., et al., An extremely high conservation of RNA-protein S7 interactions during prokaryotic ribosomal biogenesis. Biochem Mol Biol Int, 1998. 44(6): p. 1141−6.
90. Budker, V.G., et al., Specific chemical modification of ribosomes near the mRNA-binding center. Dokl Akad Nauk SSSR, 1973. 211(3): p. 725−8.