Теоретическое исследование различных кинетических режимов фотосинтеза и поиск пути увеличения количества поглощаемого CO2
Диссертация
Математическая модель может также облегчить поиск пути увеличения эффективности фотосинтеза. В настоящее время путем различных изменений фотосинтетического аппарата удавалось увеличить квантовый выход фотосинтеза. Однако такая экспериментальная работа требует много времени и средств. Кроме того, в экспериментах, как правило, изменениям подвергается только один параметр. По нашему мнению… Читать ещё >
Список литературы
- Андронов, A.A., Витт, A.A., Хайкин, С.Э., Теория колебаний. М., Наука, 1981.
- Гордиенко, Т.В., Индукционные эффекты в фотосинтезе при различном физиологическом состоянии. Диссертация на соискание степени канд. физ-мат. наук, М., МГУ, 2004.
- Дамдинсурэн, Колебательный режим послесвечения в листьях высших растений. Биофизика, 1990, т. 35, N 4, с. 687−688.
- Долгополова, А. А, Фиксация углерода, накопление крахмала, транспорт сахарозы и неорганического фосфата и первичные процессы фотосинтеза. Диссертация на соискание ученой степени кандидата физ.-мат. наук, М., МГУ, 2004.
- Караваев, В. А, Нелинейные регуляторные процессы в фотосинтезе высших растений. Диссертация на соискание ученой степени доктора физ.-мат наук, М., МГУ, 1990.
- Караваев, В.А., Теоретическая модель взаимодействия световых и темновых процессов фотосинтеза. Физиология растений, 1988, т.35, N 2, с.234−243.
- Караваев, В.А., Кукушкин, А.К., Теоретическая модель световых и темновых процессов фотосинтеза: проблема регуляции. Биофизика, 1993, 38, N 66 с. 958−975.
- Кузнецова, Е.А., Кукушкин, А.К., Сравнительное изучение медленной индукции послесвечения листьев и хлоропластов. Тезисы докл. 6-й Всесоюз. конф. по фотоэнергетике растений, Львов, 1980, с. 27.
- Кузнецова, С.А., Кукушкин, А. К., Новый теоретический подход к исследованию регуляторных связей в фотосинтезе. Биофизика, 1999, т. 44, N 3, с. 448.
- Кукушкин, А.К., Караваев, В.А., Физико-химические механизмы регуляции фотосинтеза: гипотезы, достижения, перспективы. Физическая мысль России, 1995, N 1, с. 17−30.
- Кукушкин, А.К., Тихонов, А.Н., Лекции по биофизике фотосинтеза растений. М.: Изд-во Моск. ун-та, 1988, 520 с.
- Лайск, А.Х., Кинетика фотосинтеза С3-растений. Москва. Наука. 1991 г.
- Мак-Кракен, Д., Дорн, У., Численные методы и программирование на ФОРТРАНе. М., «Мир», 1977 г., с. 411.
- Маторин, Д.Н., Венедиктов, П.С., Рубин, А.Б., Замедленная люминесценция и ее использование для оценки состояния растительного организма. Изв АН СССР, сер биол., 1985, 4, с. 508−520.
- Молчанов, А.М., Колебательные режимы как частный случай критических режимов. В.сб.: Колебательные процессы в биологических и химических системах, ч.2 Пущино, 1971, с.327−328.
- Рабинович Е., Фотосинтез, М., ИИЛ, 1959, с.ЮО.
- Рубин, А. Б., Кренделева, Т. Е., Регуляция первичных процессов фотосинтеза. Успехи биол. химии, 2003, т.43, с. 225−266.
- Рубин, А.Б., Кононенко, A.A., Пащенко, В.З., Чаморовский, С.К., Венедиктов, П.С., Принципы регуляции и модельные системы первичных процессов фотосинтеза. Итоги науки и техники ВИНИТИ, Биофизика, 1987, 22, М., с.1−212.
- Сазанов, Л. А., Караваев, В. А., Кукушкин, А .К., Математическая модель регуляции фотосинтеза. Влияние внешних факторов, затухающие колебания. Физическая химия, 1988, т. 62(12), с. 3351−3354.
- Сазанов, Л. А, Караваев, В.А, Кукушкин, А.К., Математические модели колебательных процессов и медленной индукции флуоресценции в фотосинтезе. Всб: Тр. 5 всесоюзной межуниверситетской конференции «Биология клетки», 4.1. 1987, с. 252−254.
- Сазанов, JI.A., «Математическое моделирование взаимодействия световых и темновых процессов фотосинтеза «. Диссертация на соискание степени кандидата физ.-мат. наук, Москва, МГУ, 1989.
- Фотосинтез, под ред. Говинджи, М., Мир, 1987.
- Чернавский, Д. С., Чернавская, Н. М., Колебательный процесс в биологических и химических системах. М. Наука, 1967, с. 51.
- Allen, J.F., Redox control of transcription: sensors, response regulators, activators and repressors. FEBS Letters, 1995, v. 332, p. 203−207
- Allen JF., Photosynthesis of ATP—electrons, proton pumps, rotors, and poise. Cell, 2002, v. 110, p. 273−276.
- Allen, J.F., Bennett, J., Steinback, K.E., Arntzen, C.J., Chloroplast protein phosphorylation couples plastochinone redox state to distribution of excitation energy between photosystems. Nature, 1981, v. 291, p. 25−29.
- Anderson, B, Barber, J., Mechanisms of photodamage and protein degradation during photoinhibition of photosystem II. In: Baker NR, ed. Photosynthesis and the environment. Dordrecht, The Netherlands: Kluwer Academic Publishers, 1996, p. 101— 121.
- Badger, M. R., Sharkey, T.D., von Caemmerer, S., The relationship between steady -state gas exchange of bean leaves and the levels of carbon reduction-cycle intermediates. Plants, 1984, v. 160, p. 305.
- Bainbridge, G., Madgwick, P., Parmar, S., Mitchell, R., Paul, M., Pitts, J., Keys, A.J. Parry, M.A.J., Engineering Rubisco to change its catalytic properties. J. of Exp. Botany 1995, v. 46, p. 1269−1276.
- Bendall, D. S., R.S. Manasse, R.S., Cyclic photophosphorylation and electron transport, Biochim. Biophys. Acta, 1995, v. 1229, p. 23−28.
- Clarke, J. E., Johnson, G.N., In vivo temperature dependence of cyclic and psuedocyclic electron transport in barley. Planta, 2001, v. 212, p. 808−816.
- Cleland, W.W., The kinetics of enzyme-catalyzed reactions with two or more substrates or products. I. Nomenclature and rate equations. Biochim. Biophys. Acta, 1963, v. 67, p. 104−137.
- Cruz, J. A., Avenson, T.J., Kanazawa, A., Takizawa, K., Edwards, G. E., and Kramer, M. D., Plasticity in light reactions of photosynthesis for energy production and photoprotection. J. of Exp. Botany, 2005 v. 56, N. 411, p. 39506.
- Depege, N, Bellafiore, S, Rochaix, J.D., Role of chloroplast protein kinase Stt7 in LHCII phosphorylation and state transition in Chlamydomonas. Science, 2003, v. 299, p. 1572−1575.
- Dietz, K. J., An evaluation of light and C02 limitation of leaf photosynthesis by C02 gas- exchange analysis. Planta, 1986, v. 167, p. 260.
- Diner, B.A., Babcock, G.T., Structure, dynamics, and energy conversion efficiency in photosystem II. In: Ort DR, Yocum CF, eds. Oxygenic photosynthesis: the light reactions. The Netherlands: Kluwer Academic Publishers, 1996, p. 213−247.
- Farquhar, G.D., von Caemmerer, S., Berry, J.A., A biochemical model of photosynthetic C02 assimilation in leaves of C3 species. Planta, 1980, v. 149, p. 78−90.
- Finazzi, G., Rappaport F., Furia, A., Fleischmann, M., Rochaix, J.D., Zito, F., Forti, G., Involvement of state transitions in the switch between linear and cyclic electron flow in Chlamydomonas reinhardtii. EMBO Reports, 2002, v. 3, p.280−285.
- Forsberg, J., Allen, J.F., Protein tyrosine phosphorylation in the transition to light state 2 of chloroplast thylakoids. Photosynth Res., 2001, v. 68(1), p. 71−9.
- Fridlyand, L. E., Independent changes of ATP/ADP or pH could cause oscillations in photosynthesis. J. Theor. Biol., 1998, v. 193, p. 739−741.
- Furbank, R.T., Foyer, C. H, Oscillations in levels of metabolites from the photosynthetic carbon reduction cycle in spinach leaf disks generated by the transition from air to 5% C02. Arch. Biohem. Biophys., 1986, v. 246(1), p. 240−244.
- Geiger, D. R, Servaites, J.C., Diurnal regulation of photosynthetic carbon metabolism in C3 plants. Annu Rev Plant Phys Plant Mol Biol, 1994, v. 45, p. 235−256.
- Gepts, P., A comparison between crop domestication, classical plant breeding, and genetic engineering. Crop. Science, 2002, v. 42, p. 1780−1790.
- Giersch, C., Oscillatory response of photosynthesis in leaves to environmental perturbations: a mathematical model. Arch. Biohem. Biophys., 1986, v. 245(1), p. 263 270.
- Giersch, C., Photosynthetic oscillations: Observations and models. Comments theor. Biol., 1994, v. 3, p. 339−364.
- Giersh, C., Heber, U., Krause, G.H., Plant membrane transport (Sparswick, R.M., Lucas, V.J., Daity, J., eds.), Elsevier, Amsterdam, 1980, p.65−83.
- Giordano, M., Beardall., J., Raven, J. A., C02 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. Ann. Rev. of Plant Biol., 2005, v. 56, p. 99−131.
- Gizzatkulov N., Klimov A., Lebedeva G., Demin O., DBsolve7: New update version to develop and analyze models of complex biological systems. Abstracts of the ISMB/ECCB conference, 2004, p. 260.
- Goldberg D.E., Genetic Algorithms in Search, Optimization and Machine Learning. Addison-Wesley, Reading, M. A., 1989.
- Golding, A .J., Johnson, G.N., Down-regulation of linear and activation of cyclic electron transport during drought. Planta 2003, v. 218, p. 107−114.
- Harrison, E.P., Olcer, H., Lloyd, J.C., Long, S.P., Raines, C.A., Small decreases in SBPase cause a linear decline in the apparent RuBP regeneration rate, but do not affect Rubisco carboxylation capacity. J. Exp. Botany, 2001, v. 52, p. 1779−1784.
- Heldt, H.W., Chon, C.J., Lorimer, G.H., Phosphate requirement for the light activation of ribulose- 1,5-biphosphate carboxylase in intact spinach chloroplasts. FEBS Lett. 1978, v. 92, p. 234−240.
- Horton, P., Ruban, A., Walters, R., Regulation of light harvesting in green plants. Annual Review of Plant Physiology and Plant Molecular Biology, 1996, v. 47, p. 655 684.
- Horton, P., Nicholson, H., Generation of oscillatory behavior in the Laisk model of photosynthetic carbon assimilation. Photosynth. Res., 1987, v. 12, p. J29−143.
- Joliot, P., Joliot, A., Cyclic electron transfer in plant leaf. Proceedings of the National Academy of Sciences, USA, 2002, v. 99, p. 10 209−10 214.
- Joliot, P., Joliot, A., Quantification of cyclic and linear flows in plants. Proc. Natl. Acad. Sci. USA., 2005, v. 102(13), p. 4913−8.
- Kanazawa A., Kramer D.M., In vivo modulation of nonphotochemical exciton quenching (NPQ) by regulation of the chloroplast ATP synthase. Proc. Natl. Acad. Sci., USA, 2002, v. 99, p. 12 789−12 794.
- Karpinski, S., Reynolds, H., Karpinska, B., Wingsle, G., Creissen, G., Mullineaux, P., Systemic signaling and acclimation in response to excess excitation energy in Arabidopsis. Science, 1999, v. 284, p. 654−657.
- Knaff, D. B., Ferredoxin and ferredoxin-dependent enzymes. In: Ort D. R., Yocum C. F., eds. Oxygenic photosynthesis: the light reactions. The Netherlands: Kluwer Academic Publishers, 1996, p. 333−361.
- Kramer, D. M., Cruz, J. A., Kanazawa, A., Balancing the central roles of the thylakoid proton gradient. Trends in Plant Science, 2003, v. 8, p. 27−32.
- Kurisu, G., Zhang, H., Smith, J. L., Cramer, W. A., Structure of the cytochrome b6 f complex of oxygenic photosynthesis: tuning the cavity. Science 2003, v. 302, p. 10 091 014.
- Laisk, A., Eichelmann, H, Oja V., Eatherall, A., Walker, D. A, A mathematical model of the carbon metabolism in photosynthesis. Difficulties in explaining oscillations by fructose 2,6-bisphosphate regulation. Proc.R.Soc.Lond.B, 1989, v. 237, p. 389−415.
- Laisk, A., Eichelmann, H. Towards understanding oscillations: a mathematical model of biochemistry of photosynthesis. Phil. Trans. R. Soc. London B., 1989, v. 323, p. 369 384.
- Laisk, A., Walker, D. A., Control of phosphate turnover as a rate-limiting factor and possible cause of oscillations in photosynthesis: a mathematical model. Proc.R.Soc.London. B, 1986, v. 227, p. 281−302.
- Laisk, A., Eichelmann, H., Oja, V, C3 photosynthesis in silico. Photosynthesis Research, 2006, v. 90, p. 45−66.
- Laisk, A., Siebke, K., Gerst, U., Eichelmann, H., Oja, V., Heber, U.: Oscillations in photosynthesis are initiated and upported by imbalances in the supply of ATP and NADPH to the Calvin cycle. Planta, 1991, v. 185, p. 554−562.
- Laisk, A., Walker, D.A., A mathematical model of electron transport. Thermodynamic necessity for photosystem II regulation: 'light stomata'. Proc. R. Soc. Lond. B, 1989, v. 237, p. 417−444.
- Lazar, D., Kana, R., Klinkovsky, T., and Naus, J., Experimental and theoretical study on high temperature induced changes in chlorophyll a fluorescence oscillations in barley leaves upon 2% C02. Photosynthetica, 2005, v. 43 (1), p. 13−27.
- Long, S.P., Ainsworth, E.A., Rogers, A., Ort, D.R., Rising atmospheric carbon dioxide: plants face their future. Annual Reviews of Plant Biology, 2004, v. 55, p. 591−628.
- Long, S.P., Humphries, S., Falkowski, P.G., Photoinhibition of photosynthesis in nature. Annual Review of Plant Physiology and Plant Molecular Biology, 1994, v. 45, p. 633−662.
- Long, S. P., Zhu, X. G., Naidu, S. L., Ort, D. P., Can improvement in photosynthesis increase crop yields. Plant, Cell and Environ., 2006, v. 29, p. 315−334.
- Long, S. P., Zhu, X. G., Naidu, S. L., Raines, C.A., Ort, D. P, Limits to efficiencies of primary production constraints and opportunities, In. Yields of Farmed Species (eds.
- R. Sylvester-Bradley & J. Wiseman). Nottingham University Press. Nottingham, 2005, p. 167−191.
- Malkin, R., Photosystem I electron transfer reactions-components and kinetics. In: Ort DR, YocumCF, eds. Oxygenic photosyntheseis: the light reactions. The Netherlands: Kluwer Academic Press, 1996, p. 313−332.
- Malkin, S., Fast photoacoustic transients from dark-adapted intact leaves: oxygen evolution and uptake pulses during photosynthetic induction a phenomenology record. Planta, 1987, v. 171, p. 65−72.
- Maxwell, K., Johnson, G. N., Chlorophyll fluorescence-a practical guide. J. of Exp. Botany, 2000, v. 51, p. 659−668.
- McCarty, R.E., An overview of the function, composition and structure of the chloroplast ATP synthase. In: Ort D.R., Yocum C.F., eds. Oxygenic photosynthesis: the light reactions. The Netherlands: Kluwer Academic Publishers, 1996, p. 439−451.
- Merchant, S., Sawaya, M. R, The Light Reactions: A Guide to Recent Acquisitions for the Picture Gallery. The Plant Cell, 2005, v. 17, p. 648−663.
- Mitchell, P., Chemiosmotic coupling in oxidative and photosynthetic phosphorylation. Biological Reviews of the Cambridge Philosophical Society, 1966, v. 41, p. 445−502.
- Muller, P., Li, X.-P., Niyogi, K. K., Non-photochemical quenching. A response to excess light energy. Plant Physiology, 2001, v. 125, p. 1558−1566.
- Munekage, Y., Hojo, M., Meurer, J., Endo, T., Tasaka, M., Shikanai, T., PGR5 is involved in cyclic electron flow around photosystem I and is essential for photoprotection in Arabidopsis. Cell, 2002, v. 110, p. 361−371.
- Nedbal, L., Brezina, V., Cerveny, J., Trtilek, M. Photosynthesis in dynamic light: systems biology of unconventional chlorophyll fluorescence transients in Synechocystis sp. PCC 6803. Photosynth. Res. 2005, v. 84, p. 99−106.
- Nedbal, L., Brezina, V., Complex metabolic oscillations in plants forced by harmonic irradiance. Biophys. J. 2002, v. 83, p. 2180−2189.
- Ogawa, T., Simple oscillations in photosynthesis of higherplants. Biochim. Biophys. Acta, 1982, v. 681, p. 103−109.
- Ort, D.R., Yocum, C.F., Light reactions of oxygenic photosynthesis. In: Ort D.R., Yocum C.F., eds. Oxygenic photosynthesis: the light reactions. The Netherlands: Kluwer Academic Publishers, 1996, p. 1−9.
- Ott, T., Clarke, J., Birks, K, Johnson, G., Regulation of the photosynthetic electron transport chain. Planta, 1999, v. 209, p. 250−258.
- Paul, M.J., Foyer, C.H., Sink regulation of photosynthesis, J. of Exp. Botany, 2001, v. 52 (360), p. 1383−1400.
- Petersson, G., Ryde-Petersson, U., A mathematical model of the Calvin photosynthesis cycle, Eur. J. Biochem., 1988, v. 175, p. 661−672.
- Petersson, R.B., Sivac, M. N., Walker, D.A., Carbon dioxide-induced oscillations in fluorescence and photosynthesis: role of thylakoid membrane energization in regulation of photosystem II activity Plant Physiol., 1988, v. 88, p. 1125−1130.
- Pyke, K.A., Leech, R.M., Cellular-levels of ribulose 1,5 bisphosphate carboxylase and chloroplast compartment size in wheat mesophyll-cells. J. of Exp. Botany, 1987, v. 38, p. 1949−1956.
- Quick, W. P., Neuhaus H. E., The regulation and control of photosynthetic carbon assimilation. In: Foyer, C.H. and Quick, W.P. (eds) A Molecular Approach to-Primary Metabolism in Higher Plants, Taylor and Francis, London, 1997, p. 41−62.
- Raines, C.A., The Calvin cycle revisited. Photosynthesis Research, 2003, v. 75, 1−10.
- Raines, C. A., Transgenic approaches to manipulate the environmental response of the C3 carbon fixation cycle. Plant, Cell and Environ., 2006, v. 29, p. 331−339.
- Rascher, U., Nedbal, L., Dynamics of photosynthesis in fluctuating light. Commentary. Curr. Opin. In Plant Biol., 2006, v. 9, p. 671−678.
- Rintamaki, E., Martinsuo, P., Pursiheimo, S., Aro, E.-M., Cooperative regulation of LHC II phosphorylation via plastoquinol and ferredoxin-thioredoxin system in chloroplast. Proc. Nat. Acad. USA, 2000, v. 97, p. 11 644−11 646.
- Rovers, W., Giersch, C., Photosynthetic oscillations and the interdependence of photophosphorylation and electron transport as studied by a mathematical model. BioSystems, 1995, v. 35 (1), p. 63−73.
- Ryde-Pettersson, U., Identification of possible two-reactant ources of oscillations in the Calvin photosynthesis cycle and ncillary pathways. Eur. J. Biochem., 1991, v. 198, p. 613−619.
- Sacksteder C. A., Kanazawa, A., Jacoby M.E., Kramer D.M., The proton to electron stoichiometry of steady-state photosynthesis in living plants: a proton-pumping Q-cycle is continuously engaged. Proc. Natl. Acad. Sci. USA, 2000, v. 97, p. 14 283−14 288.
- Sage R.F., Variation in the kcat of Rubisco in C-3 and C-4 plants and some implications for photosynthetic performance at high and low temperature. J. of Exp. Botany, 2002, v. 53, p. 609−620.
- Sazanov, L.A., Burrows, P.A., Nixon P.J., The chloroplast Ndh complex mediates the dark reduction of the plastoquinone pool in response to heat stress in tobacco leaves. FEBS Letters, 1998, v. 429, p. 115−118.
- Seemann, J.R., Badger, M.R., Berry, J.A., Variations in the specificity activity of ribulose-l, 5-bisphosphate carboxylase between species utilizing differing photosynthetic pathways. Plant Physiology, 1984, v. 74, p. 791−794.
- Sivak, M.N., Walker, D.A., Chlorophyll a fluorescence: can it shed light on fundamental questions in photosynthetic carbon dioxide fixation? Plant Cell Environ, 1985, v. 8, p. 439−448.
- Sivak, M.N., Walker, D.A., Photosynthesis in vivo can be limited by phosphate supply. New Phytol. 1986, v. 102, p. 499−512.
- Sorokin, E.M., Decay of luminescence of chlorophyll a light-collecting molecules. Photosynthetica, 1978, v. 12(3), p. 250.
- Stitt, M., Metabolite levels during induction in the chloroplast and extrachloroplast compartments of spinach protoplasts. Biochim. Biophys. Acta 1980, v. 593(1), p. 85 102.
- Stitt, M., Grosse, H., Woo, K.-C., Interactions between sucrose synthesis and C02 fixation. II. Alterations of fructose 2,6-bisphosphate during photosynthetic oscillations. J. Plant Physiol., 1988, v. 133, p. 138−143.
- Strehler, B., Arnold, W.A., Light production by green plants. J. Gen. Physiol., 1951, v. 34, p.809−820.
- Teusink, B., Walsh, M.C., van Dam, K., Westerhoff, H.V., The danger of metabolic pathways with turbo design. Trends in Biochemical Sciences, 1998, v. 23, p. 162−169.
- Veljovic-Jovanovic, S., Cerovic, Z.G., Induction of oscillations in chloroplasts fluorescence by re-illumination of intact isolated pea chloroplasts. Planta, 1991, v. 185, p. 397−400.
- Vener, A.V., Ohad, I., Andersson, B., Protein phosphorylation and redox sensing in chloroplast thylakoids. Curr. Opin. Plant Biol., 1998, v. l, p. 217−223.
- Walker, D. A, Sivak, M. N., Can phosphate limit photosynthetic carbon assimilation in vivo? Physiol. Veg., 1985, v. 23, p. 829−841.
- Walker, D.A., Concerning oscillations. Photosynthesis Research, 1992,. 34, p. 387 395.
- Walker, D.A., Sivak, M.N., Prinsley, R.T., Cheesbrough, J.K., Simultaneous measurement of oscillations in oxygen evolution in chlorophyll a fluorescence in leaf pieces. Plant Physiol, 1983, v. 73, p. 542−549.
- Wollman, F.-A., State transitions reveal the dynamics and fexibility of the photosynthetic apparatus. EMBO Journal, 2001, v. 20(14), p. 3623−3630.
- Woodrow, I. E., Berry, J. A., Enzymic regulation of photosynthetic C02 fixation in C3 plants. Annu. Rev. Plant. Physiol. Plant. Mol. Biol., 1988, v.39, p. 533−594.
- Zhang, H., Whitelegge, J.P., Cramer, W.A., Ferredoxin: NADP+ oxidoreductase is a subunit of the chloroplast cytochrome b6f complex. J. Biol. Chem., 2001, v. 276, p. 38 159−38 165.