Горизонтальный перенос генов между Agrobacterium spp. и высшими растениями
Диссертация
Обнаружение гомолга гена mis показывает, что по происхождению Lv Т-ДНК связана с некоторой микимопиновой плазмидой pRi, сходной с таковой, трансформировавшей виды Nicotiana. Это свойство может быть не случайным и быть как-то связанным с растительно-микробными взаимодействиями. Если синтез опинов становится полезным свойством для некоторых растений (пусть даже на низком уровне, тканеили… Читать ещё >
Список литературы
- Антонова О.Ю., Гавриленко Т. А. Полиморфизм последовательностей органельных ДНК видов картофеля // Экологическая генетика. 2006. T. IV. С. 3−10.
- Байдербек Р. Опухоли растений. Москва: Наука, 1981.
- Богомаз, Д И., Изучение взаимодействия генотипов растения и штамма Agrobacterium tumifaciens при получении форм картофеля, устойчивых к калорадскому жуку// Экологическая генетика 2005. Т. 1.С. 34−41.
- Боронникова C.B. Молекулярное маркирование и генетическая паспортизация ресурсных и редких видов растений с целью оптимизации сохранения их генофондов//Аграрный вестник Урала 2009 Т.2, С.57−59
- Генная инженерия растений. Лабораторное руководство. Учебное издание. / Дж. Дрейпер, Р. Скотт, Ф. Армитидж, Г. Дьюри, Л. Джэкоб, Р. Уолден, А. Кумар, Р. Джефферсон, Дж.Хэмил. Под редакциейо
- Дж.Дрейпера, Р. Скотта, Ф. Армитиджа, Р.Уолдена. Пер. с англ. Г. И. Эйснер, В. М. Андрианов, М.: Мир, 1991
- Гостимский А., Кокаева 3. Г., Боброва В. К. Использование молекулярных маркеров для анализа генома растений // Генетика. — 1999. Т. 35. — № 1 1 .-С. 1538−1549.
- Гостимский С.А., Кокаева З. Г., Коновалов Ф. А. Изучение организации и изменчивости генома растений с помощью молекулярных маркеров // Генетика. 2005. Т. 41. № 4. С. 480−492.
- Губанов И.А., Киселева К.В, Новиков B.C., Тихомиров в.Н. 2003, 2004. Иллюстрированный определитель растений средней плосы Росссии. Москва. Том. 2,3.
- Жуковский П.М. Культурная флора СССР, том 9. Л. 1971.
- Календарь Р.Н., Глазко В. И., Типы молекулярно-генетических маркеров и их применение// Физиология и биохимия культурных растений. 2002, Т34, N4, с.279−296
- П.Кочиева Е. 3., Оганисян А. Г. Молекулярный анализ RAPD-маркеров генома картофеля / Сельскохозяйственная биотехнология. Избранные работы. Под. ред. Шевелухи B.C. Евразия, 2000. — Т. 1. С. 24 — 32.
- Матвеева Т. В., Пигичка Т. Ю., Лутова JI.A. Характеристикаморфогенетических реакций Nicotiana langsdorffii при трансформации штаммами агробактерий дикого типа in vitro //Экологическая генетика. 2007. Т. 3. С. 21−24.
- И.Матвеева Т. В., Машкина О. С., Исаков Ю. Н., Лутова Л. А. Молекулярная паспортизация клонов карельской березы методом ПЦР с полуслучайными праймерами // Экологическая генетика, 2008, Т IV, N3, с. 16−21
- Россия присоединяется к проекту «Штрихкод жизни"/Новости науки // Элементы. 24.06.05 http://elementy.ru/news/164 539
- Рысков А.П. Мультилокусный ДНК-фингерпринтинг в генетико-популяционных исследованиях биоразнообразия // Молекуляр. биология. 1999. Т. 33. № 6. С. 880−892
- Тахтаджян A. JI. Растения в системе организмов // Жизнь растений. В 6-ти т. Т. 1. Введение. Бактерии и актиномицеты / Под ред. Н. А. Красильникова и А. А. Уранова. М.: Просвещение, 1974. — С. 49—57.
- Фролова Н.В., Матвеева Т. В., Лутова Л. А. Использование метода агробактериальной трансформации in vivo для получения фенокопий опухолеобразования у безопухолевой линии редиса Raphanus sativusL.ll Биотехнология. 2004. № 4. С. 3−7.
- Шестаков С.В.2007 Как происходит и чем лимитируется горизонтальный перенос генов у бактерий Экологическая генетика, Т. 5, № 2, С. 12−24
- Шестаков С. В. Роль горизонтального переноса генов в эволюции Доклад, прочитанный на теоретическом семинаре геологов и биологов «Происхождение живых систем». 15−20 августа 2003 г., Горный Алтай, стационар «Денисова Пещера».Электронная публикация.
- Шнеер В. С. ДНК-штрихкодирование видов животных и растений -способ их молекулярной идентификации и изучения биоразнообразия // Журнал общей биологии. Т. 70, 2009. № 4. С. 296−315
- Шнеер B.C. ДНК-штрихкодирование — новое направление в сравнительной геномике растений. Генетика. 2009. Т. 45. № 11. С. 14 361 448.
- Allardet-Servent Annick, Sylvie Michaux-Charachon, Estelle Jumas-Bilak, Lucie Karayan, Michel Ramuz Presence of One Linear and One Circular Chromosome in the Agrobacterium tumefaciens C58 Genome. // Journal of Bacteriology. 1993, P. 7869−7874
- Altamura M.M., 2004. Agrobacterium Rhizogenes rolB and rolD Genes: Regulation and Involvement in Plant Development // Plant Cell Tiss. Org. V. 77. N. l.P. 89−101.
- Altamura M.M., Archilletti T., Capone I., Constantino P., 1991, Histological analysis of the expression of Agrobacterium rhizogenes ro/5-GUS gene fusions in transgenic tobacco // New Phytol. V. 118. P. 69−78.
- Altamura M.M., Capitani F., Gazza L. et al., 1994. The plant oncogene rolB stimulates the formation of flower and root meristemoids in tobacco thin cell layers // New Phytol. V. 126. P. 283−293.
- Alvarez I., Wendel J.F., Ribosomal ITS sequences and plant phylogenetic inference./ Molecular Phylogenetics and Evolution, 2003, V.29, p. 417−434.
- Anand A., Krichevsky A., Schornack S. et al. Arabidopsis VirE2 interacting protein 2 is required for Agrobacterium T-DNA integration in plants // Plant Cell. —2007. — 19, N5,—P. 1695—1708
- Andersson J.O., Sjogren A.M., Davis L.A.M., et al. Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes. // Curr.Biol.this issue. 2002 — 10V. 32(8) — P. 1123−1128.
- Andersson J.O.Lateral gene transfer in eukaryotes// Cell Mol Life Sci. 2005 V. 62. P. 1182−1197
- Andersson JO. Horizontal gene transfer between microbial eukaryotes. Methods Mol Biol. 2009 V.532, P. 473−87.
- Aoki S., Syono K. Horizontal gene transfer and mutation of Ngrol genes in the genome of Nicotiana glauca. II Proc.Natl.Acad.Sci.USA 1999 — V. 96 N. 23 -P. 13 229−13 234.
- Archibald J. M and Keeling P.J. Recycled plastids: a green movement in eukaryotic evolution.// Trends Genet.-2002 -V.18 -P. 577−584.
- Archibald JM, Rogers MB, Toop M, Ishida K, Keeling PJ. Lateral gene transfer and the evolution of plastid-targeted proteins in the secondary plastid-containing alga Bigelowiella natans. PNAS. 2003 V. 100(13). P. 7678−7683.
- Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F., Campbell, C.S., Donoghue, M.J., The ITS region of nuclear ribosomal DNA: A valuable source of evidence on angiosperm phylogeny//Ann. Missouri Bot. Gard., 1995, V.82, p. 247−277.
- Ballas N, Citovsky V (1997) Nuclear localization signal binding protein from Arabidopsis mediates nuclear import of Agrobacterium VirD2 protein// PNAS 94: 10 723−10 728
- Bartling, D., Seedorf, M., Schmidt, R. C., and Weiler, E. W., Molecular characterization of two cloned nitrilases from Arahidopsis rhaliana: key enzymes in biosynthesis of the plant hormone indole-3-acetic acid// PNAS, 1994 V. 91, P.6021
- Baumann K., De Paolis A., Costantino P., Gualberti G., 1999. The DNA Binding Site of the Dof Protein NtBBFl Is Essential for Tissue-Specific and Auxin-Regulated Expression of the rolB Oncogene in Plants // The Plant Cell. V. 11. P. 323−333.
- Bergthorsson U, Richardson AO, Young GJ, Goertzen LR, Palmer JD. Massive horizontal transfer of mitochondrial genes from diverse land plant donors to the basal angiosperm Amborella//PNAS. 2004 V. 101. P. 17 747−17 752.
- Bettini P., Michelotti S., Bindi D. et al., 2003. Pleiotropic effect of the insertion of the Agrobacterium rhizogenes rolD gene in tomato (Lycopersicon esculentum Mill.) // Theor. Appl. Genet. V. 107. N. 5. P. 831−836.
- Bianco-Pastor J.L., Vargas P., Pfeil B.E. Coalescent Simulations Reveal Hybridization and Incomplete Lineage Sorting in Mediterranean Linaria //PLoS One. 2012- 7(6): e39089.
- Bogani P., Lio P. and Intrieri M. A physiological and molecular analysis of the genus Nicotiana. II Molecular Phylogenetics and Evolution. 1997 — V. 7 — P. 62−70.
- Bornet B. and Branchard M., Nonanchored inter simple sequence repeat (ISSR) markers: reproducible and specific tools for genome fingerprinting// Plant Mol. Biol. Rep. 2001 V. 19. P. 209−215
- Bouchez D., Camilleri C., Identification of a putative rolB gene on the TRDNA of the Agrobacterium rhizogenes A4 Ri plasmid // Plant Mol. Biol. 1990. V. 14. P. 617−619.
- Bouchez D., J.G.Tokuhisa, D.J.Liewellyn, E.S.Dennis and J.G.Ellis The ocs-element is a component of the promoters ofseveral T-DNA and plant viral genes. // The EMBO Journal, 1989 V.8 N13 P.4197−4204
- Braun A. C. and Laskaris T. Tumor Formation by Attenuated Crown-Gall Bacteria in the Presence of Growth-Promoting Substances PNAS 1942 V. 28 N. l 1 P. 468−477
- Cangelosi GA, Ankenbauer RG, Nester EW Sugars induce the Agrobacterium virulence genes through a periplasmic binding protein and a transmembrane signal protein// PNAS. 1990 V.87 P. 6708−6712.
- Capone I., Spano L., Cardarelli M. et al. Induction and growth properties of carrot roots with different complements of Agrobacterium rhizogenes T-DNA.// Plant Mol. Biol. V.- 1989 V.13 — P.43−52.
- Carattoli A Plasmid-mediated antimicrobial resistance in Salmonella enterica. Curr Issues Mol Biol. 2003 V.5 N.4 P. 113−22.
- Carmi N., Salts Y., Dedicova B. et al., 2003. Induction of parthenocarpy in tomato via specific expression of the rolB gene in the ovary // Planta. V. 217. N. 5. P. 726−735.
- Carneiro M., Vilaine F., 1993. Differential expression of the rolA plant oncogene and its effect on tobacco development // The Plant J. V. 3. N. 6. P. 785−792.
- CBOL Plant Working Group. A DNA barcode for land plants// PNAS. 2009 V. 106. P. 12 794−12 797.
- Cecchetti V., Pomponi M., Altamura M.M. et al., 2004. Expression of rolB in tobacco flowers affects the coordinated processes of anther dehiscence and style elongation // Plant J. V. 38. N. 3. P.512−525.
- Chang CH, Winans SC. Functional roles assigned to the periplasmic, linker, and receiver domains of the Agrobacterium tumefaciens VirA protein. // J Bacteriol. 1992 V. 174, P. 7033−7039.
- Chang, C. C. et al. The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): Comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications// Mol. Biol. Evol. 2006. V. 23, 279−291.
- Charity J. A, Klimaszewska K. Persistence of Agrobacterium tumefaciens in transformed conifers//Environ Biosafety Res. 2005. T.4 № 3. C. 167−77.
- Chase M. W, Salamin N., Wilkinson M., Dunwell J.M., Kesanakurthi R.P., et al. (2005) Land plants and DNA barcodes: short-term and long-term goals. Philos Trans R Soc Lond B Biol Sci 360: 1889−1895.
- Chase, M.W., Knapp, S., Cox, A.V., Clarkson, J.J., Butsko, Y., Joseph, J., Savolainen, V., Parokonny, A.S. Ann. Molecular systematics, GISH and the origin of taxa in Nicotiana (Solanaceae). Bot. (2003) 92(1): 107−27
- Chen S., Yao H., Han J., Liu C., Song J., Shi L., Zhu Y., Ma X., Gao T., Pang X., Luo K., Li Y., Li X., Jia X., Lin Y., Leon C. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species// PLoS One. 2010- V.5(l):e8613.
- Chilton M.D., Drummond M.H. and Merlo D.J. Stable incorporation of plasmid DNA into higher plant cells: the molecular basis of crown gall tumorigenesis. // Cell. 1977 — V. 11 — P. 263−271.
- Chou A.Y., Archdeacon J. and Kado K. Agrobacterium transcriptional regulator Ros as a prokaryotic zink finger protein that regulates the plant oncogene ipt. IIPNAS 1998 — V. 95 — P. 5293−52−98.
- Citovsky V., Wong M.L., Zambryski P. Cooperative interaction of Agrobacterium VirE2 protein with single stranded DNA: implications for the T-DNA transfer process// PNAS 1989., V.86 P. l 193−1197.
- Citovsky V, Wong ML, Zambryski P. Cooperative interaction of Agrobacterium VirE2 protein with single-stranded DNA: implications for the T-DNA transfer process.PNAS. 1989 V. 86(4) P. 1193−1197.
- Citovsky V., Zupan J., Warnick D., Zambryski P. Nuclear localization of Agrobacterium VirE2 protein in plant cells// Science 1992 V. 256 P. 1802−180 572. demente T. 2006. Nicotiana (Nicotiana tobaccum, Nicotiana benthamiana). Meth. Mol. Biol. 343:143−54
- Comai, L. and Kosuge, T., Involvement of plasmid deoxyribonucleic acid in indoleacetic acid synthesis in Pseudomonas savastanoi, //J. Bacteriol., 1980 V. 143, P. 950
- Comai, L., and Kosuge, T. 1982. Cloning and characterization of iaaM, a virulence determinant of Pseudomonas savastanoi. II Bacteriol. 149:40−46.
- Costantino P., Capone I., Cardarelli M. et al., 1994. Bacterial plant oncogenes: the rol genes saga // Genetica. V. 94. P. 203−211.
- Cowan R.S., Chase M.W., Kress W.J., Savolainen V. 300 000 species to identify: problems, progress, and prospects in DNA barcoding of land plants// Taxon. 2006. V. 55.1. 3. P. 611−616.
- Cronn, R.C., Small, R.L., Haselkorn, T., Wendel, J.F., Rapid diversification of the cotton genus (Gossypium: Malvaceae) revealed by analysis of sixteen nuclear and chloroplast genes.// Am. J. Bot., 2002, V. 89. P.707−725.
- Dandecar A.M., De Buck S., Depicker A. et al., 2008. Agrobacterium: From Biology to Biotechnology / edited Tzfira T., Citovsky V. NY.: Springer, 720 p.
- Daniels S.B., Peterson K.R., Strausbaugh L.D. et al. Evidence for horizontal transmission of the P transposable element between Drosophila species. // Genetics 1990 — V.124 — P. 339−355.
- Das A, Pazour GJ. Delineation of the regulatory region sequences of Agrobacterium tumefaciens virB operon. NAR1989 V. 17 P. 4541−4550.
- Das A, Stachel S, Ebert P, Allenza P, Montoya A, Nester E. Promoters of Agrobacterium tumefaciens Ti-plasmid virulence genes. NAR1986 Feb 11−14(3):1355−64.
- DavisC. C. andK. J.Wurdack. Host-to-parasite gene transfer in fl owering plants: Phylogenetic evidence from Malpighiales. Science 2004 .v. 305 P.676 -678
- De Cleene M, DeLay J (1976) The host range of crown gall. Bot Rev 42: 389 466
- De Greve H, Dhaese P, Seurinck J, Lemmers M, Van Montagu M, Schell. Nucleotide sequence and transcript map of the Agrobacterium tumefaciens Ti plasmid-encoded octopine synthase gene. J Mol Appl Genet. 1982−1(6):499−511.
- De Neve M, De Buck S, Jacobs A, Van Montagu M, Depicker A (1997) T-DNA integration patterns in co-transformed plant cells suggest that T-DNA repeats originate from co-integration of separate T-DNAs. Plant J 11: 15−29
- De Paolis A., Mauro M.L., Pomponi M. et al., 1985. Localization of agropine-synthesizing functions in the TR region of the root-inducing plasmid of Agrobacterium rhizogenes 1855.// Plasmid. V. 13. N. 1. P. 1−7.
- Dehesh K., Bruce W.B., Quail P.H., 1990. A trans-acting factor that binds to a GT-motif in a phytochrome gene promoter // Science. V. 250. N. 4986. P. 1397−1399.
- Dehio C., Grossmann K., Schell J., Schmulling T., 1993. Phenotype and hormonal status of transgenic tobacco plants overexpressing the rolA gene of Agrobacterium rhizogenes T-DNA // Plant Mol. Biol. V.23. N. 6. P. 1199−1210.
- Dellaporta S.L., Wood J., Hicks, J.B., 1983. Plant DNA mini preparation. Molecular biology of plants. A laboratory course manual // Plant Mol. Biol. Rep. V. 1. P. 19−21.
- Deng W, Chen L, Peng WT, Liang X, Sekiguchi S, Gordon MP, Comai L, Nester EW (1999) VirEl is a specific molecular chaperone for the exported singlestranded- DNA-binding protein VirE2 in Agrobacterium. Mol Microbiol 31: 1795−1807
- Doolittle WF. Lateral genomics. Trends Cell Biol. 1999 Dec-9(12):M5−8.
- Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull. V. 19. P. 11.
- Drouin G., Daoud H., Xia J. Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants. Mol. Phylogenet. EV., 2008, doi:10.1016/j.ympev.2008.09.009.
- Dumas F, Duckely M, Pelczar P, Van Gelder P, Hohn B (2001) An Agrobacterium VirE2 channel for transferred-DNA transport into plant cells. PNAS98: 485−490
- Estruch J.J., Chriqui D., Grossmann K. et al., 1991a. The plant oncogene rolC is responsible for the release of cytokinins from glucoside conjugates // The EMBO Journal. V.10.N 10. P. 2889−2895.
- Estruch J.J., Parets-Soler A., SchmQIling T., Spena A., 1991b. Cytosolic localization in transgenic plants of the rolC peptide from Agrobacterium rhizogenes II Plant Mol. Biol. V. 17. P. 547−550.
- Estruch JJ, Prinsen E, van Onckelen H, Schell J, Spena A (1991c) Viviparous leaves produced by somatic activation of an inactive cytokinin-synthesizing gene. Science 254: 1364−1367
- Falasca G., Altamura M.M., D’Angeli S. et.al., 2010 The rolD oncogene promotes axillary bud and adventitious root meristems in Arabidopsis II Plant Physiology and Biochemistry V. 48. P. 797−804.
- Feliner G.N., Rossello J.A. Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants. Mol. Phylogenet. EV., 2007, V. 44.1.2. p. 911−919.
- Felsenstein J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783−791.
- Fernandez-Mazuecos M, Vargas P. Historical Isolation versus Recent LongDistance Connections between Europe and Africa in Bifid Toadflaxes (Linaria sect. Versicolores). Plos One 6. 2011.
- Filippini, F., Rossi, V., Marin, O., et al. A plant oncogene as a phosphatase. // Nature.- 1996 V. 379 — P. 499−500.
- Frankenberger, W. T., Jr., and Poth, M., L→tryptophan transaminase of a bacterium isolated from the rhizosphere of Festuca octofrora (Gramineae), Soil Biol. Biochem., 20. 299, 1988.
- Frundt C., Meyer A.D., Ichikawa T., and Meins F. A tobacco homologue of the Ri-plasmid ORF13 gene causes cell proliferation in carrot root discs. // Mol.Gen.Genet. 1998 — V. 259 — no. 6 — P. 559 — 568.
- Furner I.J., Huffman G.A., Amasino R.M., et al. An Agrobacterium transformation in the evolution of the genus Nicotiana. II Nature. 1986 V.319 -P. 422−427.
- Ganesan G., Sankararamasubramanian H. M., Harikrishnan M. et al., 2012. MYB transcription factor from the grey mangrove is induced by stress and confers NaCl tolerance in tobacco // J. Exp. Bot. V. 63. N. 12. P. 4549−4561.
- Garcia-Vallve, S., Romeu, A., and Palau, J. 2000. Horizontal gene transfer of glycosyl hydrolases of the rumen fungi. Mol. Biol. EV. 17:352−361
- Garfinkel DJ, Simpson RB, Ream LW, White FF, Gordon MP, Nester EW (1981) Genetic analysis of crown gall: fine structure map of the T-DNA by site directed mutagenesis. Cell 27: 143−153.
- Gawel M, Wisniewska I, Rafalski A Semi-specific PCR for the evaluation of diversity among cultivars of wheat and triticale. Cell Mol Biol Lett. 2002−7(2A):577−82.
- Gelvin S.B. Agrobacterium-mQdiatQd plant transformation: the biology behind the «gene-jockeying» tool // Microbiol. Mol. Biol. Rev. — 2003. — 67. — P. 16—37.
- Ghatnekar L., Jaarola, M., and Bengtsson, B.O. 2006. The introgression of a functional nuclear gene from Poa to Festuca ovina. Proc. Biol. Sci. 273(1585):395−399.
- Gheysen G, Villarroel R, Van Montagu M Illegitimate recombination in plants: a model for T-DNA integration. Genes Dev V. 5. P.287−297
- Gogarten, J.P., Doolittle, W.F., and Lawrence, J.G. 2002. Prokaryotic evolution in light of gene transfer. Mol. Biol. EV. 19(12):2226−38.
- Goodman J.L., Wang S., Alam S. et al., 2004. Ornithine cyclodeaminase: structure, mechanism of action, and implications for the mu-crystallin family // Biochemistry. V. 43. N. 44. P. 13 883−13 891.
- Goodspeed T. H., Ed. «The genus Nicotiana.» Waltham, 1954.
- Gorbunova V, Levy AA (1997) Non-homologous DNA end joining in plant cells is associated with deletions and filler DNA insertions. Nucleic Acids Res V. 25. P. 4650^4657
- Guivarc’h A, Spena A, Noin M, Besnard C, Chriqui D et al., 1996. The pleiotropic effects induced by the rolC gene in transgenic plants are caused by expression restricted to protophloem and companion cells // Transgen. Res. V. 5. P. 3−11.
- Gupta M., Chyi Y.S., Romero-Severson J., Owen J.L. // Theoret. Appl. Genet. 1994. V.89. P.998.
- Hansen G, Vaubert D, Clerot D, Tempe J, Brevet J 1994. A new open reading frame, encoding a putative regulatory protein, in Agrobacterium rhizogenes T-DNA // C. R. Acad. Sci. III. V. 317. N. 1. P.49−53.
- Hansen G, Vaubert D, Heron JN, Clerot D, Tempe J, Brevet J (1993) Phenotypic effects of overexpression of Agrobacterium rhizogenes T-DNA ORF13 in transgenic tobacco plants are mediated by diffusible factor (s). Plant J 4: 581−585
- Hansen G., Vaubert D., Clerot D., Brevet J., 1997. Wound-inducible and organ-specific expression of ORF13 from Agrobacterium rhizogenes 8196 T-DNA in transgenic tobacco plants // Mol. Gen. Genet. V. 254. N. 3. P.337−343.
- Hansen G., Vaubert D., Clerot D., et al. A new open reading frame, encoding a putative regulatory protein, in Agrobacterium rhizogenes T-DNA. // Aacad.Sci. 1994 — V. 317 — no. 1 — P. 49 — 53.
- Hartmann, A., Singh, M., Klingmiiller, W., Isolationand characterization of Azospirillum mutants excreting high amounts of indole-acetic acid, Can. J.Microhiol., 29, 916, 1983.
- Hebert Paul, Rapini A., Chase M.W., Konno T.U.P. Phylogenetics of the New World Asclepiadeae (Apocynaceae), Taxon., 2006. V. 55, 1.1, p. 119— 124.
- Herrera-Estrella A, Chen Z, Van Montagu M, Wang K (1988) VirD proteins of Agrobacterium tumefaciens are required for the formation of a covalent DNA protein complex at the 5' terminus of T-strand molecules. EMBO J 7: 4055−4062
- Hooykaas PJJ, den Dulk-Ras H, Schilperoort RA (1988) The Agrobacterium tumefaciens T-DNA gene 6b is an one gene. Plant Mol Biol 11: 791−794 131 ¦http://digital-pcr.gene-quantification.info
- Hu Y., Chen B., Ni T. et al., 2003. Promoter of the rolC gene of Agrobacterium rhizogenes can be strongly regulated in glandular cell of transgenic tobacco // Mol. Biotechnol. V. 24. N. 2. P. 121−125.
- Huang J, Mullapudi N, Lancto CA, Scott M, Abrahamsen MS, Kissinger JC. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 2004−5(11):R88. Epub 2004 Oct 19.
- Huffman G.A., White F.F., Gordon M.P., Nester G.W., 1984. Hairy root inducing plasmid: physical map and homology to tumorinducing plasmids // J. Bact. V. 157. P. 269−276.
- Ichikawa T. and Syono K. Tobacco genetic tumors. // Plant Cell Physiol. -1991 V. 32(8)-P. 1123−1128.
- Ichikawa T., Ozeki Y. and Syono K. Evidence for the expression of the rol genes of N. glauca in genetic tumors of. N. glauca x N. langsdorffii.. II Mol.Gen.Genet.-1990 V.220 — no.2 — P.177−180.
- Inoue H, Nojima H, Okayama H. High efficiency transformation of Escherichia coli with plasmids // Gene. -1990. -V. 96(1). -P. 23−8.
- Intrieri M.C., Buiatti M. The horizontal transfer of Agrobacterium rhizogenes genes and the evolution of the genus Nicotiana II Molecular Phylogenetics and evolution. 2001 — V.20(l) — P. 100−110.
- Inze D., Follin A., Van Lijsebettens M., et al. Genetic analysis of the individual T-DNA genes of Agrobacterium tumefaciens: further evidence that two genes are involved in indole-3-acetic acid synthesis. // Mol.Gen.Genet. -1984-V.194-P.265 -274.
- Isogai, A.- Fukuchi, N.- Hayashi, M.- Kamada, H.- Harada, H.- Suzuki, A. Mikimopine, an opine in hairy roots of tobacco induced by Agrobacterium rhizogenes. Phytochemistry 1990 V. 29 No. 10 P. 3131−3134.
- Jaglo K.R., Kleff S., Amundsen K.L. et al., 2001 Components of the Arabidopsis C-repeat/dehydration- responsive element binding factor cold-response pathway are conserved in Brassica napus and other // Plant Physiol. V.127. P. 910−917.
- Jin S, Roitsch T, Ankenbauer RG, Gordon MP, Nester EW. The VirA protein of Agrobacterium tumefaciens is autophosphorylated and is essential for vir gene regulation. // J Bacteriol. 1990a V.172,1.2, p. 525−530
- Jin SG, Komari T, Gordon MP, Nester EW. Genes responsible for the supervirulence phenotype of Agrobacterium tumefaciens A281. J Bacteriol. 1987 Oct- 169(10):4417−25.
- Johnston, J. S, Pepper A.E., Hall A.E., Chen Z.J., Hodnett G., Drabek J., Lopez R., Price H.J. Evolution of genome size in Brassicaceae. Annals of Botany, 2005. 95(1): p. 229−235.
- Joos H., Inze D., Caplan A., Sormann M., Van Montagu M., Schell J. Genetic analysis of T-DNA transcripts in nopaline crown galls. April, 1983 Volume 32, Issue 4, p. 1057−1067.
- Kaneshiro, T., Slodki, M. E., and Plattner, R. D., Tryptophan catabolism to indolpyruvic and indoleaceticacids by Rhizohium japonicum L-259 mutants, Curr. Microhiol., 8, 301, 1983.
- Kaper, J. M. and Veldstra, H., On the metabolism of tryptophan by A. tumefaciens, Biochem. Biophys.Acta. 30, 401, 1958.
- Kitakura S, Fujita T, Ueno Y, Terakura S, Wabiko H, Machida Y (2002) The protein encoded by oncogene 6b from Agrobacterium tumefaciens interacts with a nuclear protein of tobacco. Plant Cell 14: 451−463
- Klee H J- M, P Gordon- Eugene W Nester Complementation analysis of Agrobacterium tumefaciens Ti plasmid mutations affecting oncogenicity. Journal of Bacteriology 1982−150(1):327−31.
- Klee H. and Romano C.P. The roles of phytohormones in development as studied in transgenic plants. // Crit. Rev. Plant. Sci. 1994 — V.13 — no.4 — P. 311 -324.
- Klee HJ, Horsch RB, Hinchee MA, Hein MB, Hoffmann NL (1987) The effects of overproduction of two Agrobacterium tumefaciens T-DNA auxin biosynthetic gene products in transgenic petunia plants. Genes Dev 1: 86−96
- Koga, J., Adachi, T., and Hidaka, H., IAA biosynthetic pathway from tryptophan via indole-3-pyruvic acid in Enterohacter cloacae, Agric. Biol. Chem. 55, 701, 1991
- Kondo, N., Nikoh, N., Ijichi, N., Shimada, M., and Fukatsu, T. 2002. Genome fragment of Wolbachia endosymbiont transferred to X chromosome of host insect. Proc Nat. Acad. Sci USA. 99 14 280−14 285.
- Koonin, E. V., Makarova, K. S., and Aravind, L. 2001. Horizontal gene transfer in prokaryotes: quantification and classification. Ann. Rev. Microbiol. 55:709−42
- Koufopanov V., Goddard M.R. and Burt A. Adaptation for horizontal transfer in homing endonuclease. // Mol. Biol. EV. 2002 — V. 19 — P. 239−246.
- Kress WJ, Erickson DL (2007) A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2: e508
- Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. PNAS102: 8369−8374.
- Lahaye R, van der Bank M, Bogarin D, Warner J, Pupulin F, et al. (2008) DNA barcoding the floras of biodiversity hotspots. PNAS105: 2923−2928.
- Landry BS, Kesseli R, Hei Leung, Michelmore RW (1987) Comparison of restriction endonucleases and sources of probes for their efficiency in detecting restriction fragment length polymorphisms in lettuce (Latuca sativa L.). Theor Appl Genet 74:646−653
- Landry BS, Michelmore RW (1987) Methods and applications of restriction fragment length polymorphism analysis to plants. In: Bruening G, Harada J, Kosuge T, Holleander A (eds) Tailoring genes for crop improvement. Plenum, New York
- Lawrence JG and Ochman H Amelioration o fbacterial genomes: rates of change and exchange- J.Mol.EV. 1997 P. 44 383−397
- Leitch I.J., Hanson L., Lim K.Y., Kovarik A., Chase M.W., Clarkson J.J., Leitch A.R.The ups and downs of genome size evolution in polyploid species of Nicotiana (Solanaceae). Ann Bot. 2008 Apr-101(6):805−14.
- Lemcke K, Prinsen E, van Onckelen H, Schmiilling TThe ORF8 gene product of Agrobacterium rhizogenes TL-DNA has tryptophan 2-monooxygenase activity. Mol Plant Microbe Interact. 2000 Jul-13(7):787−90.
- Lemcke K, Schmiilling T. Gain of function assays identify non-rol genes from Agrobacterium rhizogenes TL-DNA that alter plant morphogenesis or hormone sensitivity. Plant J. 1998 Aug-15(3):423−33.
- Lemcke K. and Schmulling T. A putative rolB gene homologue of Agrobacterium rhizogenes TR-DNA has different morphogenetic activity in tobacco than rolB. ll Plant Mol. Biol.- 1998- V. 16- no. 5-P.803−808.
- Levesque H, Delepelaire P, Rouze P, Slightom J, Tepfer D (1988) Common evolutionary origin of the central portions of the Ri TL-DNA of Agrobacterium rhizogenes and the Ti T-DNAs of Agrobacterium tumefaciens. Plant Mol Biol 11: 731−744.
- Liu Y., Kong X., Pan J., Li D. VIP1: linking Agrobacterium-mediated transformation to plant immunity? // Plant Cell Rep. — 2010. — 29, N 8. — P. 805—812.
- Liu Y., Yang H., Sakanishi A. Ultrasound: mechanical gene transfer into plant cell by sonoporation// Biotechnol. Adv. — 2006. — 24. — P. 1—16.
- Magrelli A, Langenkemper K, Dehio C. et al., 1994. Splicing of the rolA transcript of Agrobacterium rhizogenes in Arabidopsis II Science. V. 266. N. 5193. P. 1986−1988.
- Makarova, K. S., and E. V. Koonin. Evolutionary and functional genomics of the Archaea. Curr Opin Microbiol 2005. V8 P.5 86−594.
- Margulis L. Symbiosis in cell evolution: microbial communities in the archean and proterozoic eons. 2nd end: W.H.Freeman &Co, 1995.
- Mattioli R., Costantino P., Trovato M., 2009. Proline accumulation in plants. Not only stress // Plant Signal Behav. V. 4. N. 11. P. 1016−1018.
- Matveeva T.V., Frolova N.V., Dodueva I.E., Buzovkina I.S., Lutova L.A., Smets R., Van Onckelen //.Hormonal control of tumor formation in radish// Journal of Plant Growth Regulation. 2004. T. 23. № 1. C. 37−43.
- Matveeva T.V., Simonova A.V., Lutova L.A. Molecular markers of inbred radish (Raphanus sativus var. radicola pers) lines // Cell, and Mol. Biol. Lett. 2002. V. 7. P. 845−848.
- Matveeva, T.V., Lutova, L.A., Wood, D. and Nester, E.W. 2003. Search for sequences homologous to Agrobacterium T-DNA in different plant genomes. Biology of Plant-Microbe Interactions. 4: 526−529
- Mauro M.L., Trovato M., De Paolis A. et al., 1996. The Plant Oncogene rolD Stimulates Flowering in Transgenic Tobacco Plants // DEVELOPMENTAL BIOLOGY. V. 180. P. 693−700.
- Mayerhofer R, Koncz-Kalman Z, Nawrath C, Bakkeren G, Crameri A, Angelis K, Redei GP, Schell J, Hohn B, Koncz C (1991) T-DNA integration: a mode of illegitimate recombination in plants. EMBO J, 10: 697−704
- Mazodier P., Petter P. and Thompson C. Integric conjgation beween Escherichia coli and Streptomyces species.// J. Bacteriol. 1989 — V.171 -P.3583−3585.
- McBride K. E., Knauf V.C. Genetic analysis of the virE operon of the Agrobacterium Ti plasmid pTiA6. J. Bacteriol. April 1988 V.170, 1.4:14 301 437.
- Meng, B. Y., Wakasugi, T. & Sugiura, M. 2 Promoters within the Psbk-Psbl-Trng Gene-Cluster in Tobacco Chloroplast DNA. Curr. Genet. 20, 259−264 (1991).
- Messens E, Lenaerts A, van Montagu M, Hedges RW (1985) Genetic basis for opine secretion from crown gall tumor cells. MGG199: 344−348
- Meyer A.D., Ichikawa T., and Meins F. Horizontal gene transfer: regulated expression of a tobacco homologue of the Agrobacterium rhizogenes rolC gene. // Mol.Gen.Genet. 1995 — V. 249 — P. 265 — 273.
- Miranda A., Janssen G., Hodges L., Peralta E, G., Ream W. Agrobacterium tumefaciens transfers extremely long T-DNAs by a unidirectional mechanism. 1992. J Bacteriol. April- 174(7): 2288−2297.
- Murashige, T., and Skoog, F. 1962. A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiologia Plant. 15: 473−497.
- Murray, Thompson. Rapid isolation of high molecular weight plant DNA. // NAR 1980, V. 8, P. 4321−4325.
- Narumyama, S., Takai, K., Tokuyama, T., Noda, Y., Ushiro, H., and Mayaishi, O., A new metabolic pathway of tryptophan initiated by tryptophan side chain oxidase// J. Biol. Chem., 1979. V.254 P.7007
- Newmaster, S.G., Fazekas, A.J. & Ragupathy, S. DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach// Canad. J. Bot. 2006. V. 84 P. 335−341.
- Nielsen KM, Bones AM, Smalla K, van Elsas JD. Horizontal gene transfer from transgenic plants to terrestrial bacteria— a rare event? // FEMS Microbiol Rev. 1998 V. 22(2), P. 79−103.
- Nilsson O., Moritz T., Imbault N. et al. Hormonal characterisation of transgenic tobacco plantsexpressing the rolC gene of Agrobacterium rhizogenes Tl-DNA. //Plant Physiol. 1993 — V.102 — P. 363−371.
- Nilsson, O. and Olsson, O. Getting to the root: The role of the Agrobacterium rhizogenes rol genes in the formation of hairy roots// Physiol. Plant. 1997 V. 100 P. 463−473.
- Oberhansli, T., Defago, G., and Haas, D., Indole→3→acetic acid (IAA) synthesis in the biocontrol strain CFLAO of Pseudomonas fluorescens: role of tryptophan side chain oxidase//J. Gen. Microbiol., 1991.V. 137 P. 2273,
- Ochman H, Lawrence JG, Groisman EA. Lateral gene transfer and the nature of bacterial innovation//Nature. 2000 V. 405(6784) P. 299−304.
- Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV. Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. //Genome Biol. 2003 V.4(9) R55. Epub 2003
- Ooms G., Hooykaas P.J., Moolenaar G., and Schilperoort R.A. Crown gall plant tumors of abnormal morphology, induced by Agrobacterium tumefaciens, carryng mutated octopine Ti plasmids: analysis of T-DNA functions. // Gene. -1981 -V.14-nos 1−2 P.33−50.
- Oono Y., Kanaya K., Uchimiya H., 1990. Early flowering in transgenic tobacco plants possessing the rolC gene ofAgrobacterium rhizogenes Ri plasmid // Japanese Journal of Genetics 1990 V. 65 No. 1 P. 7−16
- Ophel K., Kerr A. Agrobacterium vitis sp. nov. for Strains of Agrobacterium biovar 3 from Grapevines// IJSEM1990 V. 40 P. 236−240
- Otten L, Heifer A. Biological activity of the ro/ZMike 5' end of the A4-or/8 gene from the Agrobacterium rhizogenes TL-DNA// Mol Plant-Microbe Interact 2001 V14 P. 405−411
- Otten, L., Canaday, J., Gerard, J.C., Fournier, P., Crouzet, P., Paulus, F. Evolution of agrobacteria and their Ti plasmids //Mol Plant Microbe Interact. 1992. V.5. P.279−87
- Ouartsi A., Clerot D., Meyer A.D. Dessaux Y, Brevet J, Bonfill M, The T-DNA ORF8 of the cucumopine-type Agrobacterium rhizogenes Ri plasmid is involved in auxin response in transgenic tobacco // Plant Science. V. 2004. V. 166. P. 557−567.
- Palazon J., Cusido R.M., Roig C., Pinol M.T., Expression of the rolC gene and nicotine production in transgenic roots and their regenerated plants // Plant Cell Rep. 1998. V. 17. P. 384−390.
- Pandolfini T., Storlazzi A., Calabria E. et al., The spliceosomal intron of the rolA gene of Agrobacterium rhizogenes is a prokaryotic promoter // Molecular Microbiology. 2000. V. 35. N. 6. P. 1326−1334
- Pazour GJ, Das A. virG, an Agrobacterium tumefaciens transcriptional activator, initiates translation at a UUG codon and is a sequence-specific DNA-binding protein.//J Bacteriol. 1990 V. 172, P. 1241 -1249.
- Pazour GJ, Ta CN, Das A. Mutants of Agrobacterium tumefaciens with elevated vir gene expression. // PNAS. 1991 — V.88,1.16, — p.6941−6945
- Peralta E.G., Hellmiss R., Ream W. Overdrive, a T-DNA transmission enhancer on the A. tumefaciens tumour-inducing plasmid.// EMBO J. 1986. V. 5 P. 1137−1142.
- Petit A., David C., Dahl G.A., Ellis J.G., Guyon P., Casse-Delbart F., Tempe J. Further extension of the opine concept: plasmids in Agrobacterium rhizogenes cooperate for opine degradation//MGG 1983 V. 190 P. 204−214
- Ponsonnet Cecile, Xavier Nesme Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions. // Arch Microbiol. 1994. V. 161 P. 300−309
- Powell, G. K. and Morris, R. O., Nucleotide sequence and expression of a Pseudomonas savastanoi cytokinin biosynthetic gene: homology with Agrobacterium tumefaciens tms and tzs loci//NAR 1986. V.14, P. 2555
- Richardson, A.O., and Palmer, J.D. Horizontal gene transfer in plants// J. Exp. Bot. 2007. V. 58, P. 1−9.
- Rivard S. R., M. Cappadocia, G. Vincent, N. Brisson and B. S. Landry Restriction fragment length polymorphism (RFLP) analyses of plants produced by in vitro anther culture of Solanum chacoense Bitt// TAG 1989, V. 78, P. 4956
- Rogers, M.B., Patron, N.J., and Keeling, P.J. Horizontal transfer of a eukaryotic plastid-targeted protein gene to cyanobacteria// BMC Biol. 2007. V.5 P. 26.
- Rosewich, U.L., and Kistler, H.C. Role of horizontal gene transfer in the evolution of fungi. // Ann. Rev. of Phytopath. 2000. V. 38 P. 325−363
- Salvi S., D’Orso F., and Morelli, G. Detection and Quantification of Genetically Modified Organisms Using Very Short, Locked Nucleic Acid TaqMan Probes.// J. Agric. Food Chem. 2008. 56 P. 4320−4327
- Salzberg S.L., White O., Peterson J., Eisen J.A. Microbial genes in the human genome: lateral transfer or gene loss? Science. 2001 V. 292. P. 19 031 906.
- Sambrook, J., and Russell, D.W. Molecular cloning: A laboratory manual, 3rd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York. 2001.
- Sans N., Schindler U., Schroder J. Ornithine cyclodeaminase from Ti plasmid C58: DNA sequence, enzyme properties and regulation of activity by arginine.//Eur J Biochem 1988 V. 173. N. l.P. 123−130.
- Scheiffele P, Pansegrau W, Lanka E. Initiation of Agrobacterium tumefaciens T-DNA processing: purified proteins VirDl and VirD2 catalyze siteand strand-specific cleavage of superhelical T-border DNA in vitro// J. Biol. Chem. 1995 V. 270. P. 1269−1276
- Schlueter K., Fuetterer J. and Potrykus I. Horizontal gene transfer from a transgenic potato line to a bacterial pathogen {Erwinia chrysanthemi) occurs -if at all at an extremely low frequency.// Biol. Technology.- .1995 — V.13 -N.10- P.1094−1098.
- Schmulling T., Fladung M. and Grossman K. // Hormonal content and sensitivity of transgenic tobacco and potato plants expressing single rol genes of Agrobacterium rhizogenes T-DNA. // Plant J. 1993 — V. 3 — P. 371−382.
- Schmulling T., Schell J., Spena A., 1988. Single genes from Agrobacterium rhizogenes influence plant development // The EMBO J. V.7. N. 9. P. 26 212 629.
- Schneider, E. A. and Wightman, F., Metabolism of auxin in higher plants// Annu. Rev. Physiol. 1974. V.25, P. 487,
- Scholl, E. H., Thome, J. L., McCarter, J. P. and D. McK. Bird. Horizontally transferred genes in plant-parasitic nematodes: A high-throughput genomic approach. // Genome Biology, 2003. V.4: R39. l-R39.12
- Schultz J., Muller T., Achtziger M., Seibel P. N., Dandekar T., Wolf M. The internal transcribed spacer 2 database—a web server for (not only) low level phylogenetic analyses// NAR, 2006, V. 34, Web Server issue doi:10.1093/nar/gkll29.
- Schwacke R., Grallath S., Breitkreuz K.E. et al., LeProTl, a transporter for proline, glycine betaine, and gamma-amino butyric acid in tomato pollen // Plant Cell. 1999. V. 11. N. 3.P. 377−392.
- Screen, S.E., and St. Leger, R.J. Cloning, expression and substrate specificity of a fungal chymotrypsin—evidence for lateral gene transfer from an actinomycete bacterium// J. of Biol. Chem. 2000. V. 275 P. 6689−6694
- Selkoe K.A., Toonen R.J. Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers. // Ecol Lett. 2006. V. 9 P. 615−629
- Serino G., Clerot D., Brevet J. et al., 1994. Rol genes of Agrobacterium rhizogenes cucumopine strain: sequence, effects and pattern of expression // Plant Mol. Biol. V. 26. N. 1. P.415−422.
- Sheng J. and Citovsky V. Agrobacterium plant cell DNA transport: have virulence proteins, will travel.// Plant Cell.- 1996 V. 8 — P. 1699−1710
- Shimizu-Sato S, Tanaka M., Mori H., 2009. Auxin-cytokinin interactions in the control of shoot branching // Plant Mol. Biol. V. 69. N. 4. P. 429−435.
- Shimoda N, Toyoda-Yamamoto A, Aoki S, Machida Y. Genetic evidence for an interaction between the VirA sensor protein and the ChvE sugar-binding protein of Agrobacterium. J Biol Chem. 1993 Dec 15−268(35):26 552−8.
- Shimoda N, Toyoda-Yamamoto A, Nagamine J, Usami S, Katayama M, Sakagami Y, Machida Y. Control of expression of Agrobacterium vir genes by synergistic actions of phenolic signal molecules and monosaccharides. PNAS. 1990 Sep-87(17):6684−6688.
- Shirasu K., Kado C. I. 1993 Membrane location of the Ti plasmid VirB proteins involved in the biosynthesis of a pilin-like conjugative structure on Agrobacterium tumefaciens. FEMS Microbiology Letters, V. Ill, Issue 2−3, pages 287−293
- Shkryl Y.N., Veremeichik G.N., Bulgakov V.P. et al., 2008. Individual and combined effects of the rolA, B, and C genes on anthraquinone production in Rubia cordifolia transformed calli // Biotechnol. Bioeng. V. 100. N. 1. P. 118 125.
- Singer K., Shiboleth Y.M., Li J., Tzfira T. Formation of Complex Extrachromosomal T-DNA Structures in Agrobacterium tumefaciens-Infected Plants. 2012, Plant Physiol. V. 160. P. 511−522.
- Singh H., Sen R., Baltimore D., Sharp P.A., 1986. A nuclear factor that binds to a conserved sequence motif in transcriptional control elements of immunoglobulin genes // Nature. V. 319. N. 6049. P. 154−158.
- Sinkar V.P., Pythoud F., White F.F. et al., 1988. rolA locus of the Ri plasmid directs developmental abnormalities in transgenic tobacco plants // Genes Dev. V. 2. N. 6. P. 688−697.
- Slightom J.L., Durand-Tardif M., Jouanin L., Tepfer D., 1986. Nucleotide sequence analysis of TL-DNA of Agrobacterium rhizogenes agropine type plasmid. Identification of open reading frames // J. Biol. Chem. V. 261. N. l.P. 108−121.
- Spanier K., Schell J. and Schreirer P. A functional analysis of T-DNA gene 6b: the fine tuning of cytokinin effects on shoot development. // Mol. Gen. Genet. 1989 — V. 219 — P. 209−216.
- Spano, L., Pomponi, M., Costantino, P., vanSlogteren, G.M.S., and Tempe J. 1982. Identification of T-DNA in the root-inducing plasmid of the agropine typq Agrobacterium rhizogenes 1855. Plant. Mol. Biol. 1: 291−304.
- Speck A, Hansen G, Vaubert D, Clerot D, Heron JN, Tempe J, Brevet J (1994) Studies on hairy root T-DNA: regulation and properties of ORF13 from Agrobacterium rhizogenes 8196. In Plant Pathogenic Bacteria, Versailles (France), pp 465−468
- Spena A., Langenkemper K., 1997. Mutational analysis of the rolA gene of Agrobacterium rhizogenes in tobacco: function of the rolA pre-mRNA intron and rolA proteins defective in their biological activity // Genet. Res. V. 69. N. 1. P. 11−15.
- Stachel S. E., Messens E., Van Montagu M., Zambryski P. Identification of the signal molecules produced by wounded plant cells that activate T-DNA transfer in Agrobacterium tumefaciens. 1985 Nature V. 318, P. 624−629.
- Stachel SE, Nester EW. The genetic and transcriptional organization of the vir region of the A6 Ti plasmid of Agrobacterium tumefaciens. EMBO J. 1986 Jul-5(7): 1445−54.
- Stachel SE, Timmerman B, Zambryski PC (1986) Generation of single-strandedT-DNA molecules during the initial stages of T-DNA transfer for Agrobacterium tumefaciens to plant cells. Nature 322: 706−712
- Stieger P.A., Meyer A.D. and Kathmann P. The ORF13 T-DNA gene of Agrobacterium rhizogenes confers meristematic competence to differentiated cells. // Plant Physiology. 2004 — V. 135 — P. 1798−1808.
- Sugaya S., Hayakawa V., Handa T., Uchimiya H., 1989. Cell-Specific Expression of the rolC Gene of the TL-DNA of Ri Plasmid in Transgenic Tobacco Plants // Plant Cell Physiol. V. 30. N. 5. P. 649−653.
- Sundberg C, Meek L, Carrol K, Das A, Ream W (1996) VirEl protein mediates export of single-stranded DNA binding protein VirE2 from Agrobacterium tumefaciens into plant cells. J Bacteriol 178: 1207−1212
- Suzuki K., Yamashita I. and Tanaka N. Tobacco plants were transformed by Agrobacterium rhizogertes infection during their evolution.// The Plant Journal. 2002 -V.32 — P. 775−787.
- Sykes, P.J., Neoh, S.H., Brisco, M.J., Hughes, E., Condon, J., and Morley, A.A. 1992. Quantitation of targets for PCR by use of limiting dilution. Biotechniquesl3: 444−449.
- Syvanen M. On the occurrence of horizontal gene transfer among an arbitrarily chosen group of 26 genes.//J Mol EV. 2002 V. 54(2), P. 258−66
- Szegedi E, Czako M, Otten L, Koncz C (1988) Opines in crown gall tumors induced by biotype 3 isolates of Agrobacterium tumefaciens. Physiol Mol Plant Pathol 32: 237−247
- Takai, K. and Hayaishi, O., Purification and properties of tryptophan side chain oxidase types I and II from Pseudomonas, Merh. En: ymol., 142, 195, 1987.
- Tamura K. and Nei M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10:512−526.
- Tamura K., Peterson D., Peterson N., Stecher G., Nei M., and Kumar S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Biology and Evolution 28:2731−2739.
- Tantikanjana T., Mikkelsen M.D., Hussain M. et al., 2004. Functional Analysis of the Tandem-Duplicated P450 Genes SPS/BUS/CYP79F1 and
- CYP79F2 in Glucosinolate Biosynthesis and Plant Development by Ds Transposition-Generated Double Mutants // Plant Physiol. V. 135. N. 2. P. 840 848.
- Tepfer D. Transformation of several species of higher plants by Agrobacterium rhizogenes: Sexual transmission of the transformed genotype and phenotype.// Cell. 1984 — V. 34 — P. 959−967.
- Thompson DV, Melchers LS, Idler KB, Schilperoort RA, Hooykaas PJ. Analysis of the complete nucleotide sequence of the Agrobacterium tumefaciens virB operon. NAR1988 May 25−16(10):4621−36.
- Tinland B, Hohn B (1995) Recombination between prokaryotic and eukaryotic DNA: integration of Agrobacterium tumefaciens T-DNA into the plant genome. Genet Eng 17: 209−229
- Trends Genet. 2004 May-20(5):254−60.
- Trovato M., Maras B., Linhares F., Costantino P., 2001. The plant oncogene rolD encodes a functional ornithine cyclodeaminase // Proc. Natd. Acad. Sci. USA. V. 98. N. 23. P. 13 449−13 453
- Trovato M., Mauro M.L., Costantino P., Altamura M.M., 1997. The rolD gene from Agrobacterium rhizogenes is developmentally regulated in transgenic tobacco // Protoplasma. V. 197. P. 111−120.
- Tzfira T, Frankman LR, Vaidya M, Citovsky V (2003) Site-specific integration of Agrobacterium tumefaciens T-DNA via double-stranded intermediates. Plant Physiol V. 133. P. 1011−1023
- Tzfira Tzvi, Jianxiong Li, Benoft Lacroix and Vitaly Citovsky Agrobacterium T-DNA integration: molecules and models//Trends in Genetics, V20., N8. — P.376−383.
- Tzfira, T, and Citovsky, V. 2006. Agrobacterium-mediated genetic transformation of plants: biology and biotechnology. Curr. Opin. Biotechnol. 17(2): 147−154.
- Umber M, Clement B, Otten L (2005) The T-DNA oncogene A4-or/8 from Agrobacterium rhizogenes A4 induces abnormal growth in tobacco. Mol Plant-Microbe Interact 18: 205−211
- Umber M, Voll L, Weber A, Michler P, Otten L (2002) The rolB-like part of the Agrobacterium rhizogenes orf8 gene inhibits sucrose export in tobacco. Mol Plant-Microbe Interact 15: 956−962
- Vain, P. 2007. Thirty years of plant transformation technology development Plant Biotech. J. 5: 221−229
- Vallenback, P., Bengtsson, B.O., and Ghatnekar, L. 2010. Geographic and molecular variation in a natural plant transgene. Genetica. 138(3):355−62.
- Vallenback, P., Jaarola, M., Ghatnekar, L., and Bengtsson, B.O. 2008. Origin and timing of the horizontal transfer of a PgiC gene from Poa to Festuca ovina. Mol. Phylogenet. EV. 46(3):890−896.
- Veronico, P., Jones, J., Di Vito, M., and De Giorgi C. 2001. Horizontal transfer of a bacterial gene involved in polyglutamate biosynthesis to the plant-parasitic nematode Meloidogyne artiellia. FEBS Letters. 508:470−474
- Vilaine F., Rembur J., Chriqui D., Tepfer M., 1998. Modified Development in Transgenic Tobacco Plants Expressing a ro//4:GUS Translational Fusion and Subcellular Localization of the Fusion Protein // MPMI. V. 11. N. 9. P. 855 859.
- Wang K, Herrera-Estrella A, Van Montagu M (1990) Overexpression of virDl and virD2 genes in Agrobacterium tumefaciens enhances T-complex formation and plant transformation. J Bacteriol 172: 4432−4440
- Wang K, Stachel SE, Timmerman B, Van Montagu M, Zambryski PC (1987) Sitespecific nick in the T-DNA border sequence as a result of Agrobacterium vir gene expression. Science 235: 587−591
- Ward JE, Akiyoshi DE, Regier D, Datta A, Gordon MP, Nester EW. Correction: characterization of the virB operon from Agrobacterium tumefaciens Ti plasmid. J Biol Chem. 1990 Mar 15−265(8):4768.
- Weiler EW, Spanier K (1981) Phytohormones in the formation of crown gall tumors. Planta 153: 326−337
- White FF, Ghidossi G, Gordon MP, Nester EW. Tumor induction by Agrobacterium rhizogenes involves the transfer of plasmid DNA to the plant genome. //PNAS. 1982- V.79(10) P.3193−3197.
- White, F.F., Garfinkel, D.J., Huffman, G.A., Gordon, M.P. and Nester E.W. 1983. Sequence homologous to Agrobacterium rhizogenes T-DNA in the genomes of uninfected plants. Nature. 301: 348−350
- Widespread Lateral Gene Transfer from Intracellular Bacteria to Multicellular Eukaryotes Science 21 2007: V. 317 no. 5845 P. 1753−1756
- Williams JG, et al. DNA polymorphisms amplified by arbitrary primers areuseful as genetic markers. NAR1990 Nov 25−18(22):6531−5.
- Winans SC, Allenza P, Stachel SE, McBride KE, Nester EW. Characterization of the virE operon of the Agrobacterium Ti plasmid pTiA6. NAR1987 Jan 26−15(2):825−37.
- Winans SC, Mantis NJ, Chen CY, Chang CH, Han DC. Host recognition by the VirA, VirG two-component regulatory proteins of Agrobacterium tumefaciens. II Res Microbiol. 1994, V.145,1.5−6, p. 461−473.
- Wise AA, Fang F, Lin YH, He F, Lynn DG, Binns AN. The receiver domain of hybrid histidine kinase VirA: an enhancing factor for vir gene expression in Agrobacterium tumefaciens. J Bacteriol. 2010 Mar- 192(6): 1534−42. Epub 2010 Jan 15.
- Won H, Renner S. Horizontal gene transfer from flowering plants to Gnetum PNAS V. 100, P. 10 824−10 829
- Wood, D.W., Setubal, J.C., Kaul, R., Monks, D. E, Kitajima J.P., Okura, V.K.,
- Yan X., Chen S., 2007. Regulation of plant glucosinolate metabolism // Planta. V. 226. N. 6. P. 1343−1352.
- Yanagisawa S., 2004. Dof domain proteins: plant-specific transcription factors associated with diverse phenomena unique to plants // Plant Cell Physiol. V. 45. N.4. P. 386−391.
- Yanofsky MF, Porter SG, Young C, Albright LM, Gordon MP, Nester EW (1986) The virD operon of Agrobacterium tumefaciens encodes a site-specific endonuclease. Cell 47: 471−477
- Yokoyama R., Hirose T., Fujii N. et al., 1994. The rolC promoter of Agrobacterium rhizogenes Ri plasmid is activated by sucrose in transgenic tobacco plants // Mol. Gen. Genet. V. 244. P. 15−22.
- Young ND, dePamphilis CW. Purifying selection detected in the plastid gene matK and flanking ribozyme regions within a group II intron of nonphotosynthetic plants. Mol Biol EV. 2000 Dec-17(12):1933−41.
- Zabeau, M and P. Vos. 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Pattent Office, publication 0 534 858 Al, bulletin 93/13.
- Zaenen I, Van Larebeke N, Van Montagu M, Schell J. J Supercoiled circular DNA in crown-gall inducing Agrobacterium strains. // Mol Biol. 1974 Jun 15−86(1): 109−27.
- Zardoya, R., Ding, X., Kitagawa, Y. and Chrispeels, M.J. Origin of plant glycerol transporters by horizontal gene transfer and functional recruitment. PNAS. 2002. V. 99 P. 14 893−14 896
- Zhaxybayeva O, Lapierre P, Gogarten JP. Genome mosaicism and organismal lineages.
- Ziemienowicz A, Tinland B, Bryant J, Gloeckler V, Hohn B (2000) Plant enzymes but not Agrobacterium VirD2 mediate T-DNA ligation in vitro. Mol Cell Biol 20: 6317−6322
- Zietkiewicz E., Rafalski A., Labuda D. Genome fingerprinting by simple sequence repeat (SSR)-anchored polymerase chain reaction amplification // Genomics. 1994. V. 20. P. 176−183.
- При подготовке иллюстраций использованы материалы с сайта molbiol.ru и из статей, цитированных в работе.