Роль гена WOX5 в контроле пролиферации и дифференцировки клеток на модели органогенеза клубеньков бобовых растений

Список литературы

1. Ariel FD, Manavella PA, Dezar CA et al. The true story of the HD-Zip family // Trends Plant Sci. 2007. — V. 12. -N. 9. — P.419−26.
2. Ben А. В., Shaw S.L., Oldroyd G.E.D, et al. The NFP locus of Medicago trancatula controls an early step of Nod factor signal transduction upstream of a rapid calcium flux and root hair deformation // Plant J 2003 — V. 34.*- P. l-12.
3. Bowman J., Yuval E. Formation and maintenance of the shoot apical meristem // Trends in Plant Science.- 2000.- V. 5.- N. 3.- P. 110−115.
4. Brewin N.J. Development of the legume root nodule // Annu. Rev. Cell Biol. 1991.-V. 7.- P. 1−226.
5. Brand U., Fletcher J.C., Hobe M., Meyerowitz E.M., Simon R. Dependence of stem, cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity // Science. 2000. — V. 289. -P. 617−9
6. Bright L.J., Liang Y., Mitchell D.M. et al. Thq LATD gene of Medicago truncatula. is required for both nodule and root development // Mol. Plant-Microbe Interact 2005. — V.18. -P. 521−532.
7. Caetano-Anolles G, Gresshoff PM. Alfalfa controls nodulation during the onset of Rhizobium-induced cortical cell division // Plant Physiol. -1991. -V. 95. -N. 2. -P. 366−73.
8. Chabaud M., Boisson-Dernier A., Zhang J. et al. Agrobacterium rhizogenes-mediated root transformation // The Medicago truncatula handbook. Mathesius U, Journet EP, Sumner LW (eds). 2006. ISBN 0−9 754 303−1-9. http://www.noble.org/MedicagoHandbook/
9. Chen S.-K., Kurdyukov S., Kereszt A. et al. The association of homeobox gene expression with stem cell formation and morphogenesis in culturedMedicago truncatula II Planta. 2009! — V. 230. — N. 4. — P. 827−840.
10. Cheng ZJ, Zhu SS, Gao XQ, et al. Cytokinin and auxin regulates WUS induction and inflorescence regeneration in vitro in Arabidopsis // Plant Cell Rep. -2010:-V. 29 N. 8: — P. 927−33.
11. Clark S.E., Williams R.W., Meyerowitz E.M. The CLA VATA1 gene encodes a putative receptor kinase that controls, shoot and floral meristem size in Arabidopsis II Cell. -1997. V. 16. -N. 89. -1. 4. -P. 575−85.
12. Clark S.E. Cell signaling at the shoot meristem // Nature Reviews. Molecular Cell Biology.- 2001.- V.2.- P. 276−284.
13. Dievart A, Clark SE. LRR-containing receptors regulating plant development and defense // Development. 2004. -V. 131. -N. 2. -P. 251−61.
14. DiDonato RJ, Arbuckle E, Buker S, Sheets J, Tobar J, Totong R, GrisafI P, Fink GR, Celenza JL. Arabidopsis ALF4 encodes a nuclear-localized protein required for lateral root formation // Plant Cell. -2010. -V. 22. -N. 8. -P. 2618−29.
15. Ding Z, Friml J. Auxin regulates distal stem cell differentiation in Arabidopsis roots // Proc Natl Acad Sci USA. -2010. V.107. — N.26. — P. 12 046−51.
16. Due G., Messager A. Mutagenesis of pea (Pisum sativum L.) and the isolation of mutants for nodulation and nitrogen fixation // Plant Sci. 1989. -V. 60.-P. 207−13.
17. Ehrhardt D.W., Atkinson E.M., Long S.R. Depolarization of alfalfa root hair membrane potential by Rhizobium meliloti Nod factors // Science. 1992. V. 256. P. 998−1000.
18. Ehrhardt D.W., Wais R., Long S. R. Calcium spiking in plant root hairs responding to Rhizobium nodulation signals // Cell. —1996. -V. 85. P. 673−681.
19. Felle H.H., Kondorosi E., Kondorosi A. et al. Nod factors, modulate the concentration of cytosolic free calcium differently in growing and non-growing root hairs of Medicago sativa L. // Planta. 1999. — V. 209. — P. 207−212.
20. Ferguson B.J. and Reid J.B. Cochleata: Getting to the root of legume nodules // Plant and Cell Physiology. -2005. -V. 46. -N. 9. -P. 1583−1589.
21. Ferguson BJ, Indrasumunar A, Hayashi S, Lin MH, Lin YH, Reid DE, Gresshoff PM. Molecular analysis of legume nodule development and autoregulation // J Integr Plant Biol. 2010. -V. 52. — N. 1. -P. 61−76.
22. Ferraioli S., Tata R., Rogato A. et al. Development of ectopic roots from abortive nodule primordia // Mol Plant Microbe Interact. -2004. -V. 10. -P. 104 350.
23. Frank M'., Schmulling T. Cytokinin cycles cells // Trends in Plant Science-1999.- V.4.-N.7.-P.243−244.
24. Gage DJ. Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes // Microbiol Mol Biol Rev-2004—V. 68. -P. 280−300.
25. Gonzalez-Rizzo S, Crespi M, Frugier F. The Medicago truncatula CRE1 cytokinin receptor regulates lateral root development and early symbiotic interaction with Sinorhizobium meliloti II Plant Cell. 2006. -V. 18. — N. 10. -P. 2680−93.
26. Gonzali S., Novi G., Loreti E. et al. A turanose-insensitive mutant suggests a role for WOX5 in auxin homeostasis in Arabidopsis thaliana II Plant J. -2005. -V. 44.-P. 633−645.
27. Grunewald W., Van Noorden G., Van Isterdael G. et al. Manipulation of Auxin transport in plant roots during Rhizobium symbiosis and nematode parasitism// The Plant Cell. -2009. -V. 21. -P. 2553−2562.
28. Guilfoyle T. Plant biology: Sticking with auxin // Nature. -2007. V. 446. -P. 621−622
29. Haecker A., Gross-Hardt R., Geiges B., Sarkar A., Breuninger H., Herrmann M., Laux T. Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana // Development- 2004.-V. 131.-P. 657−668.
30. Hagen G, Guilfoyle T. Auxin-responsive gene expression: genes, promoters and regulatory factors // Plant Mol Biol. 2002. -V. 49. -N. 3−4. -P. 373−85.
31. Harris J.M., Wais R., Long S.R. Rhizobium-induced calcium spiking in Lotus japonicus // Mol. Plant Microbe Interact. 2003. -V. 16. — P. 335−341.
32. Hartig K, Beck E. Crosstalk between auxin, cytokinins, and sugars in the plant cell cycle // Plant Biol (Stuttg). 2006. -V. 8. — N.3. -P. 389−96.
33. Higuchi M, Pischke MS, Mahonen AP, Miyawaki K, Hashimoto Y, Seki M, Kobayashi M, Shinozaki K, Kato T, Tabata S, Helariutta Y, Sussman MR,
34. Kakimoto T. In planta functions of the Arabidopsis cytokinin receptor family. // Proc Natl Acad Sci USA.- 2004. -V. 8. -N. 101. -1. 23. -P. 8821−6.
35. Hirakawa Y, Kondo Y, Fukuda H. TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis // Plant Cell. -2010. —V. 22.-N. 8.-P. 2618−29.
36. Hirsch A. M., Bhuvaneswari T. V., Torrey J. G. et al. Early nodulin genes are induced in alfalfa root outgrowths elicited by auxin transport inhibitors // Proc Natl Acad Sci USA. -1989. -V. 86. -N. 4. -P. 1244−1248.
37. Hirsch S, Kim J, Munoz A, Heckmann AB, Downie JA, Oldroyd GE. GRAS proteins form a DNA, binding complex to induce gene expression during nodulation signaling in Medicago truncatula // Plant Cell. -2009. -V. 21. N. 2. -P. 545−57.
38. Holmes D.S. and Quigley M. A rapid boiling method for the preparation of bacterial plasmids // Anal Biochem.-1981.-V. 114, — P.193−197.
39. Horvath B., Heidstra R, Lados M. et al. Lipooligosaccharides of Rhizobium induce infection related early nodulin gene expression- in pea root hairs // The Plant Journal. -1993. V. 4. -P. 727−733.
40. Huo X, Schnabel E, Hughes K, Frugoli J: RNAi phenotypes and the localization of a protein: GUS fusion imply a role for Medicago truncatula PIN genes in nodulation // J Plant-Growth Regul. -2006. -V. 25. -N. 2. -P. 156−165.
41. Hutchison C. E. and Kieber J. J. Cytokinin signaling in Arabidopsis II The Plant Cell. -2002.-V. 14. -P. 47−59.
42. Imin N., Nizamidin M., Wu T. et al. Factors involved in root. formation in Medicago truncatula II J Experimental Botany. 2007. -V. 58. -P. 439−451.
43. Ito Y, Nakanomyo I, Motose H, Iwamoto K, Sawa S, Dohmae N, Fukuda H Dodeca-CLE peptides as suPressors of plant stem cell differentiation // Science. -2006. -V. 313, -P. 842−845
44. Inoue H, Nojima H, Okayama H. High efficiency transformation of Escherichia coli with plasmids // Gene. -1990. -V. 96(1). -P. 23−8.
45. Jager S. Maughan S., Dewitte W., Scofield S., Murray J.A. The developmental context of cell-cycle control in plants // Seminars in Cell and developmental Biology.-2005.-V.16.- P.3 85−396
46. Jakoby M. Cell cycle and differentiation // Current Opinion in Plant Biology-2004-V.7.-1. 6.-Pi 661−669.
47. Jensen H. L. Nitrogen fixation in leguminous plants. // Proc. Int. Soc. NSW. 1942. -N. -66. -P. 68−108.
48. Jeong S, Trotochaud AE, Clark SE. The Arabidopsis CLAVATA2 gene encodes a receptor-like protein required1 for the stability of the CLAVATA1 receptor-like kinase // Plant Cell. -1999. -V. 11. -N. 10. -P. 1925−34.
49. Kamiya N., Nagasaki H., Morikami A. et al. Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem // Plant J. -2003. V. 35. -PJ 429−441.
50. Kurakawa T, Ueda N, Maekawa M, Kobayashi K, Kojima M, Nagato Y, Sakakibara H, Kyozuka J. Direct control of shoot meristem activity by a cytokinin-activating enzyme // Nature. 2007. -V. 445. -N. 7128. — P. 652−5.
51. Laplaze L., Benkova E., Casimiro I. et al. Cytokinins act directly on lateral root founder cells to inhibit root initiation // Plant Cell. -2007. -V. 19. -P. 38 893 900.
52. Lee S.Y., Rasheed S. A simple procedure for maximum yield of high-quality plasmid DNA // Biotechniques. -1990. -V. 9. N. 6. -P. 676−679.
53. Leibfried A, To J.P., Busch W., Stehling S., Kehle A., Demar M., Kieber J.J., Lohmann J.U. WUSCHEL controls meristem function by direct regulation of cytokinin-inducible response regulators // Nature 2005 — V — 438 — P. 11 721 175.
54. Lenhard, M. and Laux, T. Stem cell homeostasis in the Arabidopsis shoot meristem is regulated by intercellular movement of CLAVATA3 and its sequestration by CLAVATA1 // Development. -2003. V. 130. — P. 3163−3173.66.
55. Lewis E.B. A gene complex controlling segmentation in Drosophila // Nature.-l978.-V. 276(5688). P. 565−70.
56. Limpens E., Franken C., Smit P. et al. LysM domain receptor kinases regulating rhizobial Nod factor-induced infection // Science. -2003. -V. 302. P. 630−633.
57. Limpens E., Ramos J., Franken C. et al: RNA interference in Agrobacterium rhizogenes-transformed roots of Arabidopsis and Medicago truncatula II Journal of Experimental Botany. -2004. V. 55. — N. 399. — P. 983−992.
58. Lohar D.P., Sharopova N., Endre G. et al. Transcript analysis, of early nodulation events in Medicago truncatula II Plant Physiol. — 2006. —V. 140. -P. 221−234.
59. Lu SW, Chen S, Wang J, Yu H, Chronis D, Mitchum MG, Wang X. Structural and functional diversity of CLAVATA3/ESR (CLE)-like genes from the potato cyst nematode Globodera rostochiensis // Mol Plant Microbe Interact. -2009.- V. 22. -N. 9. -P. 1128−42
60. Malamy JE, Benfey PN. Organization and cell differentiation in lateral roots of Arabidopsis thaliana // Development. -1997. -V. 124. -N. 1. -P. 33−44.
61. Marcel M, Murray J.A.H. Cell cycle controls and the development of plant form II Curr Opin Plant Biol. 2001 .-V. 4. — P.-44−9.
62. Mathesius U., Schlaman H.R.M., Spaink H.P. et al. Auxin transport inhibition precedes root nodule formation in white clover roots and is regulated by flavonoids and derivatives of chitin oligosaccharides // Plant J. 1998. -V. 14. -P. 23−34.
63. Mathesius U., Weinman J.J., Rolfe B.J. et al. Rhizobia can induce nodules in white clover by «hijacking» mature cortical cells activated during lateral root development II Mol. Plant-Microbe Interact. 2000. -V. 13. -P. 170−182.
64. Mayer K., Schoof H., Haecker A., Lenhard M., Jurgens G., Laux T. Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem // Cell— 1998.-V.95.- P.805−815.
65. Meng L, Feldman LJ. CLE14/CLE20 peptides may interact with CLAVATA2/CORYNE receptor-like kinases to irreversibly inhibit cell division in the root meristem of Arabidopsis II Planta. -2010. -V. 232. -N. 5. -P. 1061−74.
66. Miller C. O., Skoog F., Okumura F. S., Von Saltza M. H., Strong F. M. Isolation, structure and synthesis of kinetin, a substance promoting cell division // J. Am. Chem. Soc. -1956. -V. 78. -N. 7.-P 1375−1380.
67. Miyawaki K, Matsumoto-Kitano M, Kakimoto T. Expression of cytokinin biosynthetic isopentenyltransferase genes in Arabidopsis: tissue specificity and regulation by auxin, cytokinin, and nitrate // Plant J. 2004. -V. 37. — N. 1. -P. 128−38.
68. Mortier V., Den Herder G., Whitford R., Van de Velde W., Rombauts S., D’Haeseleer K., Holsters M., Goormachtig S. CLE peptides control Medicago truncatula nodulation locally and systemically // Plant Physiology. 2010. -V. 153—P. 222−237.
69. Muller R. Dynamic and compensatory responses of Arabidopsis shoot and floral meristems to CLV3 signaling // Plant Cell.- 2006 .-V. 18(5).- P. 1188−98.
70. Muller R, Bleckmann A, Simon R. The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1 // Plant Cell. -2008. -V. 20. -N. 4. -P. 934−46.
71. Muller B, Sheen J. Advances in cytokinin signaling // Science. -2007. -N. 318.-V. 5847.-P. 68−9.
72. Murashige T., Skoog F. Revised medium for rapid bioassays with tobacco tissue cultures // Physiology of Plant.- 1962.- V.15 P.-473−479.
73. Murray J. D., Karas B. J., Sato S., Tabata S., Amyot L., Szczyglowski K. A cytokinin perception mutant colonized by Rhizobium in the absence of nodule organogenesis // Science. -2007. -V. 315. -N. 5808. -P.101−104.
74. Murray, M.G., Thompson W.F. Rapid isolation of high molecular weight DNA // Nucleic Acids Res.-1980.-V.8.- P. 4321−4325.
75. Novak K. Early action of pea symbiotic gene NOD3 is confirmed by adventitious root phenotype //Plant Science. 2010. — V. 179. — P. 472−478.
76. Oelkers K., Goffard N., Weiller G.F., Gresshoff P.M., Mathesius U., Frickey T. Bioinformatic analysis of the CLE signaling peptide family // BMC Plant Biol. -2008. — V. 8:1.
77. Ogawa M., Shinohara H., Sakagami Y., Matsubayashi Y. Arabidopsis CLV3 peptide directly binds CLV1 ectodomain // Science. 2008. — V. 18. — N. 319.-I. 5861.-P. 294.
78. Ohyama K., Shinohara H., Ogawa-Ohnishi M., Matsubayashi Y. A glycopeptide regulating stem cell fate in Arabidopsis thaliana ll Nat Chem Biol. -2009. -N. 5. -V. 8. -P. 578−80.
79. Oka-Kira E, Kawaguchi M. Long-distance signaling to control root nodule number // Curr Opin Plant Biol. -2006. -V. 9. -N.5. -P: 496−502.
80. Okamoto S., Ohnishi E., Sato S. Takahashi H, Nakazono M, Tabatai S, Kawaguchi M. Nod factor/nitrate-induced CLE genes that drive HAR1-mediated systemic regulation of nodulation // Plant and cell physiology-2009. V. 50. —N. 1'. — P. 67−77.
81. Oldroyd G. E.D. and Downie A. J. Coordinating nodule morphogenesis with Rhizobial infection in legumes // Annu. Rev. Plant Biol: 2008. — V. 59. — P. 519 546.
82. Peret B, Larrieu A., Bennett M. J. Lateral root emergence: a difficult birth // J Exp Bot. -2009. -V. 60. -N.13. -P. 3637−43.
83. Peret B, De Rybel B, Casimiro I, Benkova E, Swarup R, Laplaze L, Beeckman T, Bennett MJ. Arabidopsis lateral root development: an emerging story // Trends Plant Sci. -2009. -V. 14. -P. 399−408.
84. Postma, J. G., Jacobsen, E., and Feenstra. Three pea mutants with an altered nodulation studied by genetic analysis and grafting // J. Plant Physiol. 1988. — V. 132.-P. 424−430.
85. Radutoiu S, Madsen LH, Madsen EB, Felle HH, Umehara Y, Granlund M, Sato S, Nakamura Y, Tabata S, Sandal N, Stougaard J. Plant recognition of symbiotic bacteria requires two LysM receptor-like kinases // Nature. 2003. — V. 425.-P. 569−570.
86. Riano-Pachon D.M., Ruzicic S., Dreyer I. et al. PlnTFDB: An integrative plant transcription factor database // BMC Bioinformatics. 2007. — V. 8. — P. 42.
87. Riely BK, Lougnon G, Ane JM, Cook DR. The symbiotic ion channel homolog DMI1 is localized in the nuclear membrane of Medicago truncatula roots // Plant J. -2007. V.49. -N. 2. -P. 208−16.
88. Riou-Khamlichi C., Huntley R., Jacqmard A., Murray J.A. Cytokinin activation of Arabidopsis cell division through D-type cyclin // Science-1999 V. 283.-P. 1541−1544.
89. Sablowski R. Plant and animal stem cells: conceptually similar, molecularly distinct?//Trends Cell Biol.-2004.-V. 14.-I. 11.-P. 605−611.
90. Safronova V.I., Novikova N.I.. Comparison of two methods for root nodule bacteria preservation: lyophilization and liquid nitrogen freezing // J Microbiol Methods. 1996. -N. 24. -P. 231−237.
91. Sagan M., Due G. Sym28 and Sym29, two new genes involved in regulation of nodulation in pea (Pisum sativum L.) // Symbiosis. -1996.-V. 20. P. 229−245.
92. Sanger F., Coulson A.R. A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase // J.Mol.Biol- 1975 V.94 — P. 441 448.
93. Sarkar AK, Luijten M, Miyashima S, Lenhard M, Hashimoto T, Nakajima. K, Scheres B, Heidstra R, Laux T. Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers // Nature. 2007. — V. 446.-P. 811−814.
94. Scheres B., Benfey P., Dolan L. Root Development. The Arabidopsis Book. American Society of Plant Biologists Press. 2002. P. 1−19.
95. Scheres B. Stem-cell niches: nursery rhymes across kingdoms // Nat Rev Mol Cell Biol. 2007. -V. 8. — N. 5. -P. 345−54.
96. Schoof H., Lenhard M., Haecker A., Mayer K.F., Jurgens G., Laux T. The stem cell population of Arabidopsis shoot meristems in maintained by a regulatory loop between the CLAVATA and WUSCHEL genes // Cell. 2000.'- V. 100.- N-6.-P. 635−44.
97. Searle I.R., Men A.E., Laniya T.S. et al. Long-distance signaling in nodulation directed by a CLAVATA 1-like receptor kinase // Science. 2003. — V. 299.-N. 5603.-P. 109−12.
98. Sharma V.K., Ramirez J, Fletcher J.C. The Arabidopsis CLV3-like (CLE) genesi are expressed in diverse tissues and encode secreted proteins // Plant. Molecular Biology.- 2003.- V.51.- P. 415−425:
99. Shimizu R, Ji J, Kelsey E, Ohtsu K. et al. Tissue specificity and evolution of meristematic WOX3 function // Plant Physiol. 2009. — V. 149(2).-P. 841−50.
100. Stahl Y, Simon R. Is the Arabidopsis root niche protected by sequestration of the CLE40 signal by its putative receptor ACR4? // Plant Signal Behav. -2009. -V. 4. N. 7.-P. 634−635.
101. Takei K., Sakakibara H., Sugiyama T. Identification of, genes encoding adenylate isopentenyltransferase, a cytokinin biosynthesis enzymcj invlra^/i/o/?^/^ tHaliana II The Journal of Biological Chemestry.- 2001.- V.276. -N.-28.- P. 26 405−26 410: —
102. Tirichine L., Sandal N., Madsen L.H. et al. A gain-of-function mutation in a cytokinin receptor triggers spontaneous root nodule organogenesis // Science. — 2007. -V. 315.-N. — 5808 —P. 104−7.
103. Tsyganov V.E., Voroshilova V.A., Priefer U.B., et, al. Genetic dissection of the initiation of the infection process and nodule tissue development in the Rhizobium~pea (Pisum sativum, L.) symbiosis // Annals of Botany. -2002. -V. 89. -P. 357−366.
104. Turgeon B. G. and Bauer W. D. Infrastructure of infection-thread development during the infection of soybean by Rhizobium japonicum II Planta. — 1985.-V. 163. -N. 3. P. 328−349i
105. Veit B. Determination of cell fate in apical meristems // Current Opinion in Plant Biology.- 2004-V.7.- P. 57−64.
106. Wall L.G. The Actinorhizal Symbiosis // J Plant Growth Regul. 2000. — V. 19.-N. 2.-P. 167−182.
107. Wan X. Analyses of nodule meristem persistence and ENOD40 functioning in Medicago truncatula nodule formation. Thesis Wageningen University, The Netherlands. 2007
108. Wang H. et al. ICK1, a cyclin-dependent protein kinase inhibitor from Arabidopsis thaliana interacts with both Cdc2a and CycD3, and its expression is induced by abscisic acid // Plant J.- 1998.- V. 15, — P.501−510.
109. Wang G, Fiers M. CLE peptide signaling during plant development // Protoplasma. 2010. — V.240. -N.l-4. — P. 33−43.
110. Woodward AW, Bartel B. Auxin: regulation, action, and interaction // Ann Bot. 2005. — V.95. -N.5. — P. 707−35.
111. Wu X., Dabi T., Weigel D. Requirement of homeobox gene STIMPY/WOX9 for Arabidopsis meristem growth and maintenance // Current Biology 2005.-V. 15.- P. 436−440.
112. Zhu H., Choi H.-K., Cook D. R., Shoemaker R.C. Bridging model and crop legumes through comparative genomics // Plant Physiology. -2005. -V. 137. P. 1189−1196.1. Благодарности
113. Искренняя благодарность коллегам из лаборатории растительно-микробных взаимодействий университета г. Гента, в особенности ее руководителю Софи Гурмахтиг, за помощь и поддержку при выполнении работы и освоении новых методов в ходе научной стажировки.