Влияние органических растворителей на связывание профлавина и каталитическую активность бычьего панкреатического ?-химотрипсина
Диссертация
Интегральный анализ кинетических кривых ферментативной реакции. Научная новизна работы. В ходе работы было впервые исследовано влияние смесей воды с семью протоноакцепторными растворителями и рядом моноатомных алифатических спиртов во всем интервале составов, а также ряда гидрофобных органических растворителей, на каталитическую активность химотрипсина. Впервые разработана методика, позволяющая… Читать ещё >
Список литературы
- Fersht, A. Structure and mechanism in protein science: a guide to enzymecatalysis and protein folding / A. Fersht. -Freeman&Co. New York. -1999. 631 p.
- Cooper, A. Thermodynamics of protein folding and stability / A. Cooper. -Published in Protein: A Comprehensive’Treatise. JAI Press Inc. -1999. -V.2. -P.217—220.
- Hailing, P. Why did biocatalysis in organic media not take off in the 1930s? / P. Halling, L. Kvittingen // Trends Biotechnol. -1999. -V.17. -P.343−344.
- Zaks, A. Enzyme-catalyzed processes in organic solvents / A. Zaks, A. M. Klibanov // Proc. Natl. Acad. Sci. USA. -1985. -V.82. -P.3192−3196.
- Zaks, A. Enzymatic catalysis in nonaqueous solvents / A. Zaks, A.M.Klibanov // J. Biol. Chem. -1988. -V.263. -P.3194−3201.
- Hudson, E.P.' Biocatalysis in semi-aqueous and nearly anhydrous conditions / E.P. Hudson, R.K. Eppler, D.S. Clark // Current Opinion in Biotechnology. -2005. —V.16. —P.637—643.
- Chaudhary, A.K. Rational control of polymer molecular weight and dispersity during enzyme-catalyzed polyester synthesis in supercritical fluids / A.K. Chaudhary, E.J. Beckman, A.J. Russell // J. Am. Chem. Soc. -1995 -Y.l 17. -P. 3728−3733.
- Bordusa, F. Proteases in organic synthesis. / F. Bordusa // Chem. Rev. -2002. -V.102. -P.4817−4867.
- Doolittle, M. Lipase and phospholipase protocol / M. Doolittle, K. Reue // -Humana. -1999. -354 p.
- Dai, L. Striking activation of oxidative enzymes suspended in nonaqueous media / L. Dai, A.M. Klibanov // Proc. Natl.Acad. Sci. -1999. -V.96. 94 759 478.
- Pedersen, N.R. Effcient transesterification of sucrose catalysed by the metalloprotease thermolysin in dimethylsulfoxide / N.R. Pedersen, P J. Hailing, L.H. Pedersen, R. Wimmer, R. Matthiesen, O.R. Veltman // FEBS Letters. -2002.-Y.519.-P. 181−184.
- Qian, C. Promiscuous acylase-catalyzed aza-Michael additions of aromatic N-heterocycles in organic solvent// C. Qian, J:-M. Xu, Q. Wu, D.-S. Lu, X.-F. Lin // Tetrahedron Letters. -2007. -V.48. -P.6100−6104. -
- Michizoe, J. Activation of manganese peroxidase, in an organic medium using- a mediator- / J. Michizoe, Y. Uchimura, H. Ichinose, T. Maruyama, N. Kamiya, H. Wariishi, S. Furusaki’i M. iGoto // Biochemical Engineering Journal -2004. —Y.19. -P.43−46.
- Zaks, A. The Effect of Water on Enzyme Action in Organic Media / A. Zaks, A.M. Klibanov//J. Biol. Chem. -1988. -V.263. -P.8017−8021.
- Yang, L. Hydration of enzyme, in nonaqueous media is consistent with solvent dependence of its activity". / 'L. Yang, J.S. Dordick, S. Garde // Biophysical Journal. -2004. -V.87. -P.812−821.
- Tomiuchi, Y. Fluorescence-?spectroscopic study of a-chymotrypsin as relevant to catalytic activity in aqueous-organic media / Y. Tomiuchi, T. Kijima, H. Kise // Bull.Chem. Soc. Jpn. -1993. -V.66. -P. 1176−1181.
- Sasaki, T. Active conformation of a-chymotrypsin in organic solvents as studied by circular dichroism / T. • Sasaki, M. Kobayashi, H. Kise // Biotechnology Techniques. 1997. — V. l 1. -P.387−390.
- Hailing, P. J. High affinity binding of water by proteins is similar in air and in organic solvents./ P. J. Hailing, // Biochim.Biophys.Acta —1990. -V.1040. — P.225—228.
- McMinn, J. H. The hydration of proteins in nearly anhydrous organic solvent suspensions / J. H. McMinn, M. J. Sowa, S. B'. Charnick, M. E. Paulaitis. // Biopolymers. -1993. -V.33. -P.1213−1224.
- Valivety, R.H. Reaction rate with lipase catalyst shows similar, dependence on water activity in different organic solvents / R.H. Valivety, P J. Hailing, A.R. Macrae //Biochim.Biophys.Acta. -1992. -V.Ill8. -P.218−222:
- Affleck, R. Enzymatic catalysis and dynamics in low-water environments / R. Affleck, Z. Xu, V. Susava, K. Focht, D.S. Clark, J.S.Dordick // Proc. Natl. Sci. USA.-1992.-V.89,-P. 1100−1104. .
- Мартинек, К. Взаимодействие конкурентных ингибиторов с активным центром а-химотрипсина / К. Мартинек, А. В. Левашов, И. В. Березин // Молекулярная Биология. -1970. -Вып. 3. -С.339−347.
- Мартинек, К. Гидрофобное взаимодействие алифатических спиртов сактивным центром а-химотрипсина, / К. Мартинек, А. В. Левашов, И.В.
- Березин // Молекулярная Биология. -1970- -Вып. 4. -С.517−527.1. I. I.,. ч. 1. ли.>h.'167
- Fink, A.L. Effect of Dimethyl Sulfoxide on the Interaction of Proflavine with oc-Chymotrypsin / A.L. Fink // Biochemistry. -1974. -V.13. -P.277−280.
- Affleck, R. Solvent dielectric affects on protein dynamics / R. Affleck, C.A. Haynes, D.S. Clark//Proc. Natl. Sci. USA. -1992. -V.89. -P.5167−5170.
- Fitzpatrick, P.A. Enzyme crystal1 structure in neat organic solvent / P.A. Fitzpatrick, A.C.U. Steinmetz, D. Ringe, A. M. Klibanov // Proc. Natl. Acad. Sci. USA. -1993. -V.90. -P.8653−8657.
- Schmitke, J.L. The crystal structure of subtilisin Carlsberg in anhydrous dioxane and its comparison with those in water and acetonitrile / J.L. Schmitke, L.J. Stern, A.M. Klibanov //-Proc. Natl. Acad. Sci. USA. -1997. -V.94. -P. 4250−4255. 1 .
- Schmitke, J.L. Organic solvent binding to crystalline subtilisin in mostly aqueous media* and< in the neat solvents / Schmitke J.L., Stern L.J.-, Klibanov A.M. // Biochemical and Biophysical' Research Communications. -1998. -V.248. —P.273−277. .?.
- Yennavar, N.H. X-ray crystal structure of y-chymotrypsin in hexane / N.H. Yennavar, H.P. Yennavar, G.K. Farber // Biochemistry. -1994. -V.32, -P.7326−7336.
- Wang, Z. X-ray studies on cross-linked lysozyme crystals in acetonitrile-water mixtures / Z. Wang, G. Zhu, M. Qian, M. Shao, Y. Jia, Y. Tang // Biochim. Biophys. Acta. -1998. -V.1384. -P.335−344.
- Zhu, G. X-ray studies on two forms of bovine p-trypsin crystals in neat cyclohexane / G. Zhu, Q. Huang, Z. Wang, M. Qian, Y. Jia, Y. Tang // Biochim. Biophys. Acta. -1998. -V.1429. -P. 142−150.
- Dennis, S. Computational mapping identifies the binding sites of organic solvents on proteins / S. Dennis, T. Kortvelyesi, S. Vajda // Proc. Natl. Acad. Sci. USA. -2002. -V.99. -P.4290−4295.
- Gribenow, K. Lyophilization-induced reversible changes in the secondary structure of proteins / K. Gribenow, A.M. Klibanov // Proc. Natl. Acad. Sci. USA. -1995. -V.92. -P. 10 969−10 976.
- Costantino, H.R. Fourier-transform infrared spectroscopic investigation of protein stability in the lyophilized form / H.R. Costantino, K. Griebenow, P. Mishra, R. Langer, A.M. Klibanov // Biochim. Biophys Acta. -1995. -V.1253. -P.69−74. -l4.
- Griebenow, K. Can conformational changes be responsible for solvent and excipient effects on the catalytic behavior of subtilisin Carlsberg in organic solvents? / K. Griebenow, A.M. Klibanov // Biotechnol. Bioeng- -1997. -V.53. -P.351−362., .
- Dong, 1 A. Effect of secondary structure on the activity of enzymes suspended in’organic solvent / A. Dong, J.D. Meyer, B.S. Kendrick, M.C. Manning, J.F. Carpenter//Arch. Biochem. Biophys. -1996. -V.334. -P.406−414.
- Singer, S.J. The propeties of proteins in nonaqueous solvents // Adv. Protein Chem. -1962. -V.17. -P.l-68.
- Chang, N. Protein separation and purification in neat dimethylsulfoxide / N. Chang, S.J. Hen, A.M. Klibanov // Biochem. Biophys Res. Comm. -1991. -V. 176.-P. 1462−1468.
- Хургин, Ю.И. Влияние диметилсульфоксида на вторичную структуру некоторых5 глобулярных.I?белковь'/п Ю. И. Хургин, Ю. М. Азизов, JLB. Абатуров, Г. Н. Коган, В. Я. Росляков //Биофизика. -1972. -Т. 17. -С.390.
- Jackson, М. Beware of proteins in DMSO / M. Jackson, H.H. Mantsch // Biochim. Biophys. Acta. -1991. -V.1078. -P.231−235.
- Sirotkin, V.A. Interaction enthalpies of solid bovine pancreatic a-chymotrypsin with organic solvents: comparison with FTIR-spectroscopic data /
- V.A. Sirotkin, A.N. Zinatullin, B.N. Solomonov, D.A. Faizullin, V.D. Fedotov // Thermochimica Acta. -2002. -V.382. -P. 151−160.
- Benson, S.W. Surface areas of protein. II. Adsorption of non-polar gases / S.W. Benson, D.A. Ellis // J. Am. Chem. Soc. -1950. -V.72. -P.2095−2102.
- Gorbatchuk, V.Y. Vapor sorption of organic compounds on human serum albumin / V.V. Gorbatchuk, M.A. Ziganshin, B.N. Solomonov, M.D. Borisiver // J. Phys. Org. Chem. -1997. -V.10. -P.901−907.
- Gorbatchuk, V.V. Homotropic cooperative binding of organic solvent vapors by solid trypsin / V.V. Gorbatchuk, M.A. Ziganshin, N.A. Mironov, B.N. Solomonov // Biochim. Biophys. Acta. -2001. -V.1545. -P.326−338.
- Graber, M. Solvent as a competitive inhibitor for Candida antarctica lipase B / M. Graber, R. Irague, E. Rosenfeld, S. Lamare, L. Franson, K. Hult // Biochim. Biophys. Acta. -2007. -V.1774. -P. 1052−1057.
- Tawaki, S. Inversion of enzyme enantioselectivity mediated by the solvent / S. Tawaki, A.M. Klibanov // J. Amer. Chem. Soc. -1992. -V.114. -P.1882−1884.
- Wescott, C.R. The solvent dependence of enzyme specificity / C.R. Wescott, A.M. Klibanov //Biochim. Biophys. Acta. -1994. -V.1206. -P. 1−9.
- Zaks, A. Substrate specificity’of enzymes in organic solvents vs. Water is reversed / A. Zaks, A.M. Klibanov // J. Am. Chem. Soc. -1986. -V.108. -P.2767−2768.
- Carrea, G. Role of solvents in the control of enzyme selectivity in organic media / G. Carrea, G. Ottolina, S, Riva. // TIBTECH. -1995. -V.13. -P.63−70.
- Wescott, C. R' Rational control of enzymatic enantioselectivity through solvation? thermodynamics / C.R. Wescott, H. Noritomi, A.M. Klibanov // J. Am. Chem. Soc. -1996. -V.l 18. -P. 10 365−10 370.
- Zacharis, E. Volatile buffers can override the «pH memory» of subtilisin catalysis in organic media / E. Zacharis, P.J. Hailing, D.G. Rees // Proc. Natl. Acad. Sci. USA. -1999- -V.96.-P.1201−1205.
- Ke, T. On Enzymatic activity in organic solvents as a function of enzyme history/ T. Ke, AMI Klibanov // Biotech: Bioeng. -1998. -V.57. -P:746−750.
- Stahl, M. Induced stereoselectivity and substrate selectivity of bio-imprinted a-chymotrypsin. in anhydrous organic media / Ml Stahl, U. Jeppson-Wistrand, M.-O. Mannson, K. Mosbach // J. Am. Chem. Soc. -1991. -V.113. -P.9366−9368.
- Rich, J O. Controlling subtilisin activity and selectivity in organic media by imprinting with nucleophilic substrates / J-.O. Rich, J.S. Dordick // J. Am. Chem. Soc. -1997. -V.T19. -P.3245−3252.
- Rich, J.O. Molecular imprinting- of. enzymes with water-insoluble ligands for nonaqueous biocatalysis / Js Ol Rich, .V.V. Mozhaev, J-S1 Dordick, D.S. Clark, Y.L. Khmclnitsky // J. Am. Chem. Soc. -2002. -V.124.-P.5254−5255.
- Khmelnitsky, Y.L. Salts -dramatically enhance activity of enzymes suspended in organic solvents / Y.L. Khmelnitsky, S.H. Welch, D.S. Clark, J.S. Dordick // J. Am. Chem. Soc. -1994. -V.l 16. -P.2647−2648.
- Ooe, Y. Increase of catalytic activity of a-chymotrypsin in organic solvent by co-lyophilization with cyclodextrins / Y. Ooe, S. Yamamoto, M. Kobayashi, H. Kise // Biotech. Lett. -1999. -V.21. -P.385−389.
- Distel, K.A. Biocatalysis using an organic-soluble enzyme for the preparation of poly (lactic acid) in- organic solvents / K.A. Distel, G. Zhu,.P. Wang // Bioresource Technology. -2005. -V.96. -P.617−623.
- Гладилин, A.K. Стабильность ферментов в системах с органическими^ растворителями / А. К. Гладилин, А. В. Левашов // Биохимия —1998. -Т.63.1. C.408−421.
- Zaks, A. Enzymatic- catalysis in organic media at 100 °C / A. Zaks, A.M. Klibanov // Science. -1984.-V.224. -P. 1249−1251.
- Volkin, D.V. Enzyme thermoinactivation in anhydrous organic solvents /
- D.V. Volkin, A. Staubli, R. Langer, A.M.- Klibanov // Biotechnol. Bioeng. -1991. —V.37. —P.843−853.
- Ayala, G. Thermostability of membrane enzymes in organic solvents / G. Ayala, M.T. Gomez-Puyou, A. Gomez-Puyou, A. Drszon // FEBS Lett. -1986. -V.203. —P.41—43.
- Pazhang, M. Effects of water-miscible solvents and polyhydroxy compounds on the structure and enzymatic activity of thermolysin / M. Pazhang, K. Khajeh,
- B. Ranjbar, S. Hosseikhani // Journal of Biotechnology. -2006. -V.127. -P.45−53.
- Gribenow, К. On protein denaturationin Aqueous-Organic Mixtures but not in Pure Organic Solvents / K. Gribenow, A.M. Klibanov // J. Am. Ghem. Soc. -1996.—V.l 18.-P.l 1695−11 700. n:. .
- Сироткин, B.A. Сорбция паров воды и ацетонитрила сывороточным альбумином человека / В. А. Сироткин, Б. Н. Соломонов, Д. А. Файзуллин, В. Д. Федотов // Журнал физической химии. -2002. —Т. 76. -С.2255−2262.
- Ogino, H. Stabilities and conformational transitions of various proteases in the presence of an organic solvent / H. Ogino, Y. Gemba, Y. Yutori, N. Doukyu, K. Ishimi, H. Ishikawa // Biotechnol. Prog. -2007. -V.23. -P. 155−161.
- Mozhaev, Y.V. Catalytic activity and denaturation of enzymes in water/organic cosolvent mixtures. / V.V. Mozhaev, Y.L. Khmelnitsky, — M.V. Sergeeva, A.B. Belova, N.L. Klyachko, A.V. Levashov, K. Martinek // Eur. J. Biochem: -1989: -V.184. -P-597−602:
- Gupta, M.N. Polarity index: the guiding solvent parameter for enzyme stability in aqueous-organic cosolvent-mixtures / M.N. Gupta, R. Batra, R. Tyagi, A. Sharma // Biotechnoh. Prog-.M997:v^V-.13- -PI284−288:
- Simon, L.M. Stability of hydrolytic enzymes in water-organic solvent systems / L. M: Simony K. Laszlo, A. Vertesi, K. Bagi, B. Szajeni // J. Mol. Catal. B: Enzym. -1998.-V.4. -P.41−45.
- Simon, L.M. The effects of organic solvent/water mixtures on the structure and catalytic activity of porcine pepsin / L.M. Simon, M. Kotorman, A. Szabo, J. Nemcsok, I. Laczko // Process Biochemistry. -2007. -V.42. -P.909−912.
- Ruth, D.M. Solvent and thermal stability, and pH kinetics, of proline-specific dipeptidyl peptidase IV-like enzyme from, bovine serum / D: M. Ruth, S. J- Buckley, B1 °F.O'Connor, C. O’Fagain // Enzyme and Microbial Technology -2007. -V.4T. -P-307−311.
- Fernandes, J-F.A. Operational!-Stability of High Initial Activity Protease Catalysts in Organic Solvents / J.F.A. Fernandes, P.J. Hailing // Biotechnoh Prog. -2002. -V. 18. -P. 1455−1457. .
- Мосолов, B. B- Протеолитические ферменты / В .В. Мосолов- -М. -1971.-404с... .
- Сироткин, В.А. Влияние ацетонитрила на связывание конкурентного ингибитора профлавина и каталитическую активность бычьего панкреатического а-химотрипсина / В.А. Сироткин- Т. А. Мухаметзянов // Журн. физ. химии.-2006.-Т.80.-С.923−928.
- Сироткин, В.А. Влияние диоксана на связывание конкурентного ингибитора профлавина и каталитическую активность бычьего панкреатического- а-химотрипсина / В. А. Сироткин, Т. А. Мухаметзянов Ю.В. Карманова // Журн. физ. химии.-2007. -Т81. -С. 1160−1164-
- Клёсов, А.А., Ферментативный- катализ / А. А. Клёсов, И.В. Березин- -Изд-во Моск. Ун-та. -1980- -Т. 1. -264 с.. i'105." Schnell^ Si. Closed--form solution! for. time-dependent enzyme kinetics / S.
- Schnell- C. Mendoza// J: Theor. Biol. -1997. -V.187i.^P-207−212I, ?
- Dixon, — M. Enzymes / M. Dixon, E.G. Webb- -kongmans. -1964. -950 p.
- Краткий справочник физико-химических величин / Под. ред.: Равдель А. А., Пономарева А. М-'-Л-- Химия.-1983.-231 с.
- Bernhard, S. A: On the interaction of the active site of a-chymotrypsimwith' chromophores: proflavine binding and enzyme conformation during- catalysis / S.A. Bernhard, B.F. Lee, Z. H- Tashjian// JC Mol. Biol: -1966. -V.18. -P.405−420.
- Glazer, A.N.'Spectral studies-of the interaction of a-chymotrypsin and trypsine with proflavine / A.N. Glazer // Proc. N.A.S. Biochemistry. -1965. -V.54. -P. 171—176-s
- Himoe, A. Investigation of the chymotrypsin catalysed hydrolysis of specific substrates / A. Himoe, K.G. Brandt, R.J. DeSa, G.P. Hess // J.Biol.Chem. -1969. -V.244. -P.3483−3493.
- Свердлова, O.B. Электронные спектры в органической химии / О. В. Свердлова. —JL- Химия. —1978. -248 с.
- Киркитадзе, М.Д. Денатурированное состояние лизоцима в диметилсульфоксиде / М. Д. Киркитадзе, А. К. Сурин, С. А. Потехин // Биоорганическая химия. -1996. -Т.22. -С.20−23.
- Klyosov, A.A. The reaction of a-chymotrypsin and related proteins with ester substrates in non-aqueous solvents / A.A. Klyosov, N. Van Viet, I.V. Berezin // Eur. J. Biochem. 1975. -V.59. -P.3−7.
- Хургин, Ю.И. Изучение твердофазных ферментативных реакций III. Необратимая инактивация а-химотрипсина бензилсульфонилфторидом / Ю. И. Хургин, Е. Ю. Максарева // Биоорганическая химия. -1991. -Т. 17. -С.76−80.
- Solomonov,' B.N. Calorimetric- determination of the hydrogen-bonding enthalpy for the neat aliphatic alcohols / B.N. Solomonov, V.B.Novikov, M.A.Varfolomeev, A.E.Klimovitskii // Journal of Physical Organic Chemistry. -2005.-V.18.-P.1132−1137.
- Бендецкий, K. M: Интегральный анализ кинетики ферментативных реакций / K.M. Бендецкий // Молекулярная биология. -1968. -Т.2. -С.3−11.