Получение и применение изотопомеров белков для количественного масс-спектрометрического определения белков в биологических объектах
Диссертация
Определение концентрации пептидов и белков — целевых продуктов при производстве лекарственных препаратов, диагностических наборов, реагентов для биохимических исследований — является актуальной задачей. В последние годы для определения концентрации белков, помимо традиционных методов анализа, успешно используются масс-спектрометрия. Это произошло после внедрения в практику мягких методов… Читать ещё >
Список литературы
- Краснов Н.В., Куснер Ю. С., Миргородская O.A. и др. О механизмах образования квазимолекулярных ионов при испарении многозарядных ионных кластеров в газодинамических столкновениях // Журнал технической физики. Т. 58. 1988. С. 2113−2123.
- Zenobi R., Knochenmuss R. Ion Formation in MALDI Mass Spectrometry // Mass Spectrometry Reviews. Vol. 17. 1998. P. 337−366.
- Cech N.B., Enke C.G. Practical implications of some recent studies in electrospray ionization fundamentals // Mass Spectrometry Reviews. Vol. 20. 2001. P. 362−387.
- Dole. M., Mack, L.L., Hines, R.L. Molecular Beams of Macroions // Journal of Chemical Physics. Vol. 49. 1968. P. 2240−2249.
- Александров M.JI., Галль Л. Н., Краснов H.B. и др. Экстракция ионов из растворов при атмосферном давлении новый метод масс-спектрометрического анализа // ДАН СССР. Т. 277. 1984. С. 379−383.
- Yamashita М., Fenn J.B. Electrospray Ion Source. Another Variation of Free-Jet Theme // The Journal of Physical Chemistry. Vol. 88. 1984. P. 4451−4459.
- Fenn J.B., Mann, M., Meng C.K. et al. Electrospray ionization for mass spectrometry of large biomolecules // Science. Vol. 246. 1989. P. 64−71.
- J.B. Fenn, M. Mann. Mass Spectrometry, Clinical and Biomedical Applications // Plenum Press, New York. 1992, Vol. 1, 355 p.
- Karas M., Bachmann D., Bahr U. et al. Matrix-assisted ultraviolet-laser desorption of nonvolatile compounds // Int. J. Mass Spectrom. & Ion Processes. Vol. 78. 1987. P. 53−68.
- Karas M., Hillenkamp F. Laser desorption ionization of proteins with molecular masses exceeding 10,000 Daltons // Anal. Chem. Vol. 60. 1988. P. 2299−2301.
- Tanaka K., Waki H., Ido Y. et al. Protein and Polymer Analyses up to m/z 100 000 by Laser Ionization Time-of flight Mass Spectrometry // Rapid Commun. Mass Spectrom. Vol. 2. 1988. P. 151−153.
- Karas M., Hillennkamp F. Matrix-assisted laser desorbtion/ionisation, an experience // International Journal of Mass Spectrometry. Vol. 200. 2000. P. 7177.
- Vorderwulbecke S., Cleverley S., Weinberger S.R. et al. Protein quantification by SELDI-TOF-MS-based ProteinChipT System // Nat. Methods. Vol. 2. 2005. P. 393−395.
- Tang N., Tornatore P., Weinberge S.R. Current Developments in SELDI Affinity Technology // Mass Spectrometry Reviews. Vol.23. 2004. P. 34−44.
- Hancock W.S. ed. New Methods in Peptide Mapping for the Characterisation of Proteins // CRC Press, Boca Raton, FL, 1996. 246 p.
- Jespersen, S, Niessen, W.M.A., Tjaden U.R. et al. Quantitative Bioanalysis Using Matrix-assisted Laser Desorbtion/ionisation Mass Spectrometry // Journal of Mass Spectrometry. Vol. 30. 1995. P. 357−364.
- Ong S.E., Mann M. Mass spectrometry-based proteomics turns quantitative // Nature Chemical Biology. Vol. 1. 2005. P. 252−262.
- Oda Y., Huang K., Cross F.R. et al. Accurate quantitation of protein expression and site-specific phosphorylation // Proc. Natl. Acad. Sei. Vol. 96. 1999. P. 6591−6596.
- Ong S.E., Blagoev B., Kratchmarova I. et al. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics // Mol. Cell. Proteomics. V. 1. 2002. P. 376−386.
- Gygi S.P., Rist B., Gerber S.A. et al. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags // Nat. Biotechnol. V. 17. 1999. P. 994−999.
- Ross P.L., Huang Y.L.N., Marchese J.N. et al. Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents // Molecular & cellular proteomics. Vol. 3. 2004. P. 1154−1169.
- Schmidt A., Kellermann J., Lottspeich F. A novel strategy for quantitative proteornics using isotope-coded protein labels // Proteomics. Vol. 5. 2004. P. 415.
- Kellermann J. ICPL-isotope-coded protein label // Methods Mol. Biol. Vol. 424. 2008. P. 113−123.
- Zappacosta F., Annan R.S. N-terminal isotope tagging strategy for quantitative proteomics: results-driven analysis of protein abundance changes // Anal. Chem. Vol. 76. 2004. P. 6618−6627.
- Thompson A, Schafer J, Kuhn K. et.al. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS // Anal. Chem. Vol. 75. 2003. P. 1895−1904.
- Dayon L.A. Hainard V. Licker N. et al. Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags // Anal. Chem. Vol. 80. 2008. P. 2921−2931.
- Zhang J., Wang Y., Li S. Deuterium Isobaric Amine-Reactive Tags for Quantitative Proteomics // Anal. Chem. Vol. 82. N. 18. 2010. P. 7588−7595.
- Gerber S.A., Rush J., Stemman O. et al. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS // Proc. Natl. Acad. Sci. USA. Vol. 100. 2003. P. 6940−6945.
- Pan S., Zhang H., Rush. J. et al. High throughput proteome screening for biomarker detection // Mol. Cell Proteomics. Vol. 4. 2005. P. 182−190.
- Beynon R.J., Doherty M.K., Pratt J.M. et al. Multiplexed absolute quantification in proteomics: expression and use of artificial QCAT proteins containing concatenated signature peptides // Nature Methods. Vol. 2. 2005. P. 587−589.
- Bantscheff M., Schirle M., Sweetman G. et al. Quantitative mass spectrometry in proteomics: a critical review // Anal. Bioanal. Chem. Vol. 389. 2007. P. 1017−1031.
- Mirgorodskaya O.A., Koerner R., Novikov A.V. et al. Absolute quantitation of proteins by a combination of acid hydrolysis and matrix-assisted laser desorption/ionization mass spectrometry // Anal. Chem. Vol. 76. 2004. P. 35 693 575.
- Новиков A.B., Савельева H.B., Краснов H.B. и др. Использование ESI-MS и изотопно-меченых аминокислотных стандартов для определения концентрации белков // Научное приборостроение. Т. 12. № 4. 2002. С. 7080.
- Miyagi M., Sekhar Rao K.C. Proteolytic 180-Labeling Strategies for Quantitative Proteomics // Mass Spectrometry reviews. Vol. 26. 2007. P. 121— 136.
- Yan W., Chen S. Mass spectrometry-based quantitative proteomic profiling // Briefings in Functional Genomics and Proteomics. Vol. 4. N. 1. 2005. P. 1−12.
- Patel K., Borchardt R.T. Chemical Pathways of Peptide Degradation. II. Kinetics of Deamidation of an Asparaginyl Residue in a Model Hexapeptide // Pharmaceutical research. Vol. 7. N. 7. 1990. P. 703−711.
- Patel K., Borchardt R.T. Chemical Pathways of Peptide Degradation. III. Effect of Primary Sequence on the Pathways of Deamidation of an Asparaginyl Residue in Hexapeptides // Pharmaceutical research. Vol. 7. N. 8. 1990. P. 787 793.
- Oliyay C., Borchardt R.T. Chemical Pathways of Peptide Degradation. IV. Pathways, Kinetics and Mechanism of an Aspartyl Residue in a Model Hexapeptide // Pharmaceutical research. Vol. 10. N. 1. 1990. P. 95−102.
- Meloun B., Moravek L., Kostka V. Complete amino-acid sequence of humanserum albumin // FEBS Letters. Vol. 58. N. 1. 1975. P. 134−137.
- The Plasma Proteins, 2nd Ed. / Putnam F. W. Ed. // Academic Press, New York. 1975.V. 1,650 p.
- Steiner R.F., Roth, J., Robbins, J. The binding of thyroxine by serum albumin as measured by fluorescence quenching // J. Biol. Chem. Vol. 241. 1966. P. 560 567.
- Petitpas I., Bhattacharya A.A., Twine S. et al. Crystal structure analysis of warfarin binding to human serum albumin // The Journal of Biological Chemistry. Vol. 276. N. 25. 2001. P. 22 804−22 809.
- Inoue M., Hirata E., Morino Yo. et al. The Role of Albumin in the Hepatic Transport of Bilirubin: Studies in Mutant Analbuminemic Rats // J. Biochem. Vol. 97. N. 3. 1985. P. 737−743.
- Boggs J.M., Moscarello M.A., Papahadjopoulos, D. Lipid-protein interactions // Wiley-Interscience, New York. 1982. V. 2, 320 p.
- Saroff H.A., Lewis M. S. The Binding of Calcium Ions to Serum Albumin // J. Phys. Chem. Vol. 67. N. 6. 1963. P. 1211−1216.
- Quinlan G.J. Albumin: Biochemical properties and therapeutic potential // Hepatology. Vol. 41. 2005. P. 1211−1219.
- Jalan R, Schnurr K., Mookerjee R.P. et al. Alterations in the functional capacity of albumin in patients with decompensated cirrhosis is associated with increased mortality // Hepatology. Vol. 50. N. 2. 2009. P. 555−564.
- Geers A.B., Koomans H.A., Roos J.C. et al. Functional relationships in the nephrotic syndrome // Kidney Int. Vol. 26. N. 3. 1984. P. 324−330.
- Arques S., Ambrosi P. Human serum albumin in the clinical syndrome of heart failure // J. Card. Fail. Vol. 17. N. 6. 2011. P. 451158.
- Martini W.Z., Wolf S.E., Chinkes D.L. et al. Enhanced albumin synthesis in severely burned adults // Shock. V. 34. N. 4. 2010. P. 364−368.
- Sullivan D.H., Johnson L.E., Dennis R.A. et al. The Interrelationships among albumin, nutrient intake, and inflammation in elderly recuperative care patients // J. Nutr. Health Aging. Vol. 15. N. 4. 2011. P. 311−315.
- Rasouli M., Okhovatian A., Enderami A. Serum proteins profile as an indicator of malignancy: multivariate logistic regression and ROC analyses // Clin. Chem. Lab. Med. Vol. 43. N. 9. 2005. P. 913−918.
- Ashkenazi I., Epshtein Y. Alternations in plasma volume and protein during and after a continuous 110-kilometer march with 20-kilogram backpack load // Mil. Med. Vol. 163, N. 10. 1998. P. 687−691.
- Matthew J. McQueen M.J., Don-Wauchope A.C. Requesting and Interpreting Urine Albumin Measurements in the Primary Health Care Setting // Clinical Chemistry. Vol. 54. 2008. P. 1595−1597.
- Henskens Y.M., van der Velden U., Veerman E.C. et al. Protein, albumin and су statin concentrations in saliva of healthy subjects and of patients with gingivitis or periodontitis // J. Periodontal Res. Vol. 28. N. 1. 1993. P. 43−48.
- Li K., Chen Z., Duan F. et al. Quantification of tear proteins by SDS-PAGE with an internal standard protein: a new method with special reference to small volume tears // Graefes Arch. Clin. Exp. Ophthalmol. Vol. 248. N. 6. 2010. P. 853−862.
- Альтшулер Б.Ю., Раков C.C., Ткачев Г. А. Методические аспекты лабораторного определения низких концентраций белка в биологических жидкостях (опыт применения математического анализа) // Вопросы медицинской химии. №. 4. 2001.
- Kumarasamy R., Bausch J., Kopcha D. et al. An enzyme-linked immunosorbent assay (ELISA) for quantitation of adducts of granulocyte-macrophage colony stimulating factor (GM-CSF) and human serum albumin
- HSA) in stressed solution mixtures // Pharm. Res. Vol. 11. N. 3. 1994. P. 365 371.
- O’connell T. Understanding and Interpreting Serum Protein Electrophoresis // American Family Physician. Vol. 71. 2005. P. 105−112.
- Levreri I., Musante L., Petretto A. et al. Separation of human serum proteins using the Beckman-Coulter PF2D system: analysis of ion exchange-based first dimension chromatography // Clin. Chem. Lab. Med. Vol. 43. N. 12. 2005. P. 1327−1333.
- Gettins P.G. Serpin structure, mechanism, and function // Chem. Rev. 2002. Vol. 102. N. 12. P. 4751^*804.
- Kushner I., Mackiewicz A., Baumann H. Acute Phase Proteins // CRC Press. 1993. 703 p.
- Harris C.C., Primack A., Cohen M.H. Elevated alpharantitrypsin serum levels in lung cancer patients // Cancer. Vol. 34. 1974. P. 280−281.
- Ganrot P.O., Bjerre B. Alpha-I antitrypsin and alpha-2 macroglobulin concentration in serum during pregnancy // Acta Obstet. Gynecol. Scand. Vol. 46. 1967. P. 126−137.
- Cleve H., Behrend T. Quantitative immunological determination of alpha-1 acid glycoprotein and alpha-I antitrypsin in the sera of patients with rheumatoid arthritis // Z. Rheumatol. Vol. 25. 1966. P. 278−283.
- Alkins S.A., O’Malley P. Should health-care systems pay for replacement therapy in patients with alpha (l)-antitrypsin deficiency? A critical review and cost-effectiveness analysis // Chest. Vol. 117. N. 3. 2000. P. 3875−3880.
- Kolarich D., Weber A., Turecek P.L. et al. Comprehensive glyco-proteomic analysis of human alpha 1-antitrypsin and its charge isoforms // Proteomics. Vol. 6. N. 11.2006. P. 3369−3380.
- Guanti G., Di Loreto M. Alpha 1-Antitrypsin quantitative and qualitative (Pi phenotyping) characterization in Down syndrome subjects and in their parents // Am. J. Hum. Genet. Vol. 32. N. 2. 1980. P. 174−178.
- Triger D.R., Millward-Sadler G.H., Czaykowski A.A. et al. Alpha-1-antitrypsin Deficiency and Liver Disease in Adults // QJM: An International Journal of Medicine. Vol. 45. N. 2. 1976. P. 351−372.
- Gupta A.K., Sarin G.S. Immunoassay of serum alpha-1 antitrypsin level in uveitis // British Journal of Ophthalmology. Vol. 68. 1984. P. 242−244.
- Corda L, Medicina D, La Piana G.E. Population Genetic Screening for Alphal-Antitrypsin Deficiency in a High-Prevalence Area // Respiration. International Journal of Thoracic Medicine. Vol. 82. N. 5. 2011. P. 41825.
- Ferrarotti I., Scabini R., Campo I. et al. Laboratory diagnosis of alphal-antitrypsin deficiency // Transl. Res. Vol. 150. N. 5. 2007. P. 267−274.
- Wasiluk A, Dabrowska M, Jaworski S. et al. Levels of alpha-2-macroglobulin in blood serum of women giving birth to hypotrophic and eutrophic newborns // Przegl. Lek. Vol. 57. N. 12. 2000. P. 717−719.
- Blacker D, Wilcox M.A., Laird N.M. et al. Alpha-2 macroglobulin is genetically associated with Alzheimer disease // Nature Genetics. Vol. 19. N. 4. 1998. P. 357−360.
- Kovacs D.M. Alpha2-macroglobulin in late-onset Alzheimer’s disease // Exp. Gerontol. Vol. 35. N. 4. 2000. P. 473−479.
- Petersen C.M., Povlsen J.V., Ingerslev J. Enzyme-linked immunosorbent assay (ELISA) for the measurement of small quantities of a2-macroglobulin // Scandinavian Journal of Clinical and Laboratory Investigation. Vol. 45. N. 8. 1985. P. 735−740.
- Ponting C.P., Marshall J.M., Cederholm-Williams S.A. Plasminogen: a structural review // Blood Coag. Fibrin. Vol. 3. 1992. P. 605−614.
- Henkin J., Marcotte P., Yang H. The plasminogen-plasmin system // Prog. Card Disease. Vol. 2. 1991. P. 135−164.
- Hach-Wunderle V., Scharrer L, Lottenberg R. Congenital deficiency of plasminogen and its relationship to venous Thrombosis // Thromb. Haem. Vol. 59. N. 2. 1988. P. 277−280.
- Hermentin P., Cuesta-Linker Т., Weisse J. Comparative analysis of the activity and content of different streptokinase preparations // Eur. Heart J. Vol. 26. N. 9. 2005. P. 933−940.
- Tsugita A., Takamoto K., Kamo M. et al. C-terminal sequencing of protein. A novel acid hydrolysis and analysis by mass spectrometry // Eur. J. Biochem. Vol. 206. 1992. P. 691−696.
- Вентцель E.C., Овчаров JI.A. Теория вероятностей и ее инженерные приложения // М., 2000, 135 с.
- Sottrup-Jensen L. Alpha-macroglobulins: structure, shape, and mechanism of proteinase complex formation // J. Biol. Chem. Vol. 264. N. 20. 1989. P. 1 153 911 542.